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==Local KinKal development with Muse==
==Local KinKal development with Muse==
===Introduction===
<font color=red size=+1>These instructions only work on SL7/UPS, not on AL9/Spack.</font>
This section describes how to do simultaneous development of KinKal and Offline.  Because KinKal uses a different build system than does Offline, you need to take a few additional steps when you start.  Once you have taken these steps "muse build" will first build KinKal, but only if necessary, and install it into a local UPS area; it will then build Offline using KinKal from the the local UPS area.
This writeup assumes that you have a basic knowledge of [[UPS]] and of [[Muse]]; in particular you should understand what a Muse envset is and how to use it.  Normally you will choose the envset recommended by Offline and this example is written assuming that's what you want to do.  If you are new to this work and you need to use a different envset, your mentor will tell you which one to use.  Section  [[#Using An Alternate envset]] describes how the workflow must be changed in order to use a different envset.


===Initial build===
===Initial build===
To develop new code in KinKal and call it in Offline you will need to define your own version of KinKal and install it in your own private extension to UPS.  
 
You need to do some initial setup in a throwaway shell:
<ol>
* create a [[Muse]] workDir and cd there
<li> In a clean shell, create a [[Muse]] workDir and cd there
  <pre>
<pre>
setup mu2e
mkdir 'myworkdir'
cd 'myworkdir'
</pre> </li>
<li>clone KinKal into the Muse workdir as your would normally. Add the Mu2e KinKal repo as a remote and checkout the main branch of the Mu2e KinKal remote.
<pre>
git clone git@github.com:<your GitHub username>/KinKal
cd KinKal
git remote add -f mu2e https://github.com/KFTrack/KinKal
git checkout -b work_branch mu2e/main
cd ..
</pre>
</pre>
* checkout your fork of Offline in the muse workdir as you would normally
</li>
<li> Clone your fork of Offline into the muse workdir as you would normally.  Add the Mu2e Offline repo as a remote and checkout the main branch of the Mu2e Offline remote.  If you need other muse-aware repos (Production, TrkAna, ...) for your workflow, you can add them too
<pre>
<pre>
git clone git@github.com:<your GitHub username>/Offline
git clone git@github.com:<your GitHub username>/Offline
Line 16: Line 34:
git checkout -b work_branch mu2e/master
git checkout -b work_branch mu2e/master
cd ..
cd ..
# Optional: repeat the above pattern for any of Production, TrkAna ...
</pre></li>
<li> Setup the Mu2e development environment
<pre>
mu2einit
setup codetools
</pre> </li>
<li> Choose a UPS version number for your local build of KinKal.  The number will have no meaning outside of your muse working directory so you can use any number that is not already in use. Choosing version 99.9.0 is likely to be safe for a long time to come.  The version number must have 3 dot separated fields.</li>
<li> Build KinKal; create a local ups directory and install the build of KinKal into that UPS area.
<pre>
kk2ups -v "99.9.0" -b -i -m "" -j 8
</pre>
On mu2ebuild02 you may increase 8 to 32.  This command will build both the profile and debug versions of KinKal.  The option -m with an empty string tells Kkk2ups to choose the version of root that matches the default for building Offline. See section [[#Using An Alternate envset]] for when you should provide a non-empty string.
</li>
<li> If everything worked correctly, the output of this command will end with
<pre>
Begin install.
Begin install of prof version.
Begin install of debug version.
KinKal_to_UPS/build completed with status 0
</pre>
</pre>
* create a fork of KinKal in GitHub (if you don't already have one): Go to the [KinKal GitHub page | https://github.com/KFTrack/KinKal], then under the 'fork' menu select 'Create a new fork'.  You must be logged in to your GitHub account.
</li>
 
<li> Look at the files created by kk2ups:
* checkout your fork of KinKal in the muse workdir .The KinKal development model is the same as Offline: start with the head of main, create your own branch, develop and commit to that, and make a PR to KinKal when your development is ready.
<pre>
ls artexternals/KinKal/
</pre>
This will produce the output:
<pre>
<pre>
git clone git@github.com:<your GitHub username>/KinKal
v99_09_00  v99_09_00.version
cd KinKal
git remote add -f mu2e https://github.com/KFTrack/KinKal
git checkout -b work_branch mu2e/main
cd ..
</pre>
</pre>
* checkout KinKal_to_UPS
Also do
<pre>
<pre>
git clone https://github.com/Mu2e/KinKal_to_UPS
ls artexternals/KinKal/v99_09_00
</pre>
</pre>
 
This will produce output similar to:
* setup Muse
muse setup
this puts a root and other products in the environment, which the KinKal build will detect
* build KinKal according  to the instructions in README.  make sure to run the test (make test)
<pre>
<pre>
mkdir build_profile
include  slf7.x86_64.debug.e20.p3915 slf7.x86_64.e20.p3915.prof  source  ups
cd build_profile
cmake ../KinKal -DCMAKE_BUILD_TYPE=Release    [or Debug]
make -j 20
make test
cd ..
</pre>
</pre>
* create the directory 'artexternals' in the muse workdirCopying in the upsfiles makes UPS recognize this area.
As Mu2e Offline evolves to newer versions of g++ and python, the qualifiers e20 and p3915 will change.
</li>
<li> Look at Offline/.muse to find the name of the default envset for building Offline. In these instructions we will call that pxyzMake a local muse subdirectory and make a copy of pxyz inside of it.
<pre>
<pre>
mkdir artexternals
mkdir muse
rsync -aur /cvmfs/mu2e.opensciencegrid.org/artexternals/.upsfiles artexternals/
cd muse
cp /cvmfs/mu2e.opensciencegrid.org/DataFiles/Muse/pxyz unnn
</pre>
</pre>
* install this build in artexternalsFor version, it can be arbitrary, it shouldn't correspond to an actual tag. It will only be used to point to this artexternals area. IN this case we used the next logical tag, in anticipation of the local development becoming the next version.
where unnn is the name of your copy envset, for example u046The name unnn has no meaning outside of your muse working directory.
KinKal_to_UPS/build -v v0.1.6 -i
</li>
* create an envset that points to your local UPS version of KinKal
<li>  Edit the envset unnn to make two changes
** find the envset recommended for the current Offline
  <ol>
> grep ENVSET Offline/.muse
    <li> Find the line that sets up KinKal and replace the version number with v99_09_00
ENVSET p003
  <pre>
** copy it locally
  setup KinKal v99_09_00 -q +${MUSE_BUILD}:+${MUSE_COMPILER_E}:+${MUSE_PYTHON}'
mkdir muse
  </pre>
cp $MUSE_ENVSET_DIR/p003 muse/u004
  </li>
** edit muse/u004 so that it sets up your local version of KinKal
  <li> Add the following line after the last setup command:
setup -B KinKal v00_01_06 -q +${MUSE_BUILD}:+${MUSE_COMPILER_E}:+${MUSE_PYTHON}
    <pre> export MUSE_PREBUILD="kk2ups -v \"99.9.0\" -b -i -j 24" </pre>
 
This line is not the same as the command given in step 6; it omits the -m argumentWhen muse executes this command a version of root will already be setup in your environmen and kk2ups will use that version of root.
At this point, the KinKal is built and UPS-installed locallyNow start a new shell, because we need to setup again, this time with this local build in the environment.
  </li>
  </ol>
<li> cd back to the muse working directory and setup muse using the envset you just created
  <pre>cd ..
muse setup -q unnn</pre>
<li> Build Offline and any other repos that you cloned in step 3; if anything has changed in KinKal since the last build, this command will also rebuild KinKal and reinstall it in the local artexternals.
  <pre>muse build -j 8 </pre>
  On mu2ebuild02 you may increase 8 to 32.</li>
<li> Now you can edit files in any of KinKal, Offline and any other locally cloned repos. When you want to rebuild you can do so with a single command:
  <pre>muse build -j 8 </pre>
  On mu2ebuild02 you may increase 8 to 32.</li>
</ol>


* create a new shell, and cd to your muse workdir
====About kk2ups ====
setup mu2e
<ol>
* execute the following, to tell UPS to look here first for your products
<li> The command kk2ups is short for "KinKal to UPS" and is found in codetools.  The command you issued in step 6 will
  export PRODUCTS=${PWD}/artexternals:${PRODUCTS}
<ol>
* setup muse, now using the envset you created, which points to your local KinKal installation
  <li> (-b) build the existing checkout in the local clone of KinKal
  muse setup -q u004
  <li> (-i) if necessary, create a local directory named artexternals, configure it as a UPS repositor
* and build Offline
  <li> (-i) copy the build of KinKal into artexternals/KinKal/v99_09_00 and configure it as a UPS product.
muse build -j 20
  </ol>
</li>


===Rebuilding KinKal===
<li> The full syntax of the kk2ups option -m is: -m "args", where args is will be given as arguments to muse setup.  For example to request envset pabc
assuming you are in a fully setup environment, where you could run the code, for example,
* edit KinKal as needed
* rebuild KinKal
<pre>
<pre>
cd build_profile
kk2ups -v "99.9.0" -b -i -m "-q pabc" -j 8
make -j 20
make test
cd ..
</pre>
</pre>
* now re-install this build in the UPS artexternals area, it will overwrite the previous
Internally kk2ups looks up the version of root that is chosen by "muse setup $args" and uses that version of root to build KinKal.  In step 6, args is an empty string, which tells kk2ups to use the default envset. Because you have a clone of Offline in your Muse working area, the default envset is that specified by Offline/.muse.
KinKal_to_UPS/build -v v0.1.6 -i
</li>
 
<li> kk2ups has an online help feature:
===Returning to the area===
* to return in a new shell, you only need to repeat the setups:
<pre>
<pre>
cd workDir
kk2ups -?
setup mu2e
export PRODUCTS=${PWD}/artexternals:${PRODUCTS}
muse setup -q u004
</pre>
</pre>
<li> To learn more about kk2ups you can read [https://github.com/Mu2e/codetools/blob/main/KinKal_to_UPS/README.md https://github.com/Mu2e/codetools/blob/main/KinKal_to_UPS/README.md].
</ol>


===Adding debug build===
===Using An Alternate envset===
An environment can only be setup once, so for an process, you must choose one or the otherThe steps all follow form the prof build
 
* setups.  Setup muse in debug.  Since you don't have the new KinKal in debug, you can setup root by setting up the published versions
If you need to use an alternative envset, you need to modify two steps in the above procedureIn this example, the alternate envset is named pabc:
<ul>
<li> In step 6, supply the alternate envset as the value of the -m argument to kk2ups
<pre>
<pre>
setup mu2e
kk2ups -v "99.9.0" -b -i -m "-q pabc" -j 8
cd workDir
</pre></li>
muse setup -q debug  (defaults to envset p003)
<li> In step 10.1, make a copy of the alternate envset
</pre>
* build debug KinKal using the same fake version as for prof
<pre>
<pre>
mkdir build_debug
mkdir muse
cd build_debug
cd muse
cmake ../KinKal  -DCMAKE_BUILD_TYPE=Debug
cp /cvmfs/mu2e.opensciencegrid.org/DataFiles/Muse/pabc unnn
make -j 20
make test
cd ..
KinKal_to_UPS/build -v v0.1.6 -i
</pre>
</pre>
* now that the debug version of the local KinKal product is available, you need to setup in new process to get the full environment
</li>
</ul>
Be sure to use the same envset in both places.
 
===Rebuilding KinKal===
In earlier versions of this workflow there were explicit steps required to rebuild KinKal when needed.  These steps are now done automatically/
 
 
===Returning to the area===
 
If you want to restart work in a new shell, follow these steps:
<pre>
<pre>
cd workDir
cd 'workdir'
setup mu2e
mu2einit
export PRODUCTS=${PWD}/artexternals:${PRODUCTS}
setup codetools
muse setup -q u004:debug
muse setup -q unnn
</pre>
</pre>
where unnn is the envset you created during the initial build.  You can then edit files and build as needed.


===What if you update Offline?===


If you update the version of Offline in your working area:
===Adding debug build===
# Compare the old and new versions of Offline to see if the version or qualifiers of root have changed.
# If they have not, you are done with this section.  If they have, then you need to do the following:
# Make a new build of KinKal using the modified root and install it in your local artexternals directory.
## Hint: you may wish to investigate the -s versionSuffix option in KinKal_to_UPS.
## Hint: remember to start a new login session
# Follow the instructions in [[Muse#Maintaining_a_Customized_Setup]] to update your local muse/uNNN file to select your new build of KinKal.


==Original Notes==
Due to the way that UPS works, it is not possible to work on both prof and debug builds in the same shell.  You need to do each in a separate shell.


To develop new code in KinKal and call it in Offline you will need to define your own version of KinKal and install it in your own private extension to UPS.  You need to do some initial setup in a throwaway shell:
To add a debug build to an existing prof build, start a clean shell and:
* create a [[Muse]] workDir and cd there
<pre>
* checkout your fork of Offline in the muse workdir as you would normally
cd 'myworkdir'
* checkout your fork of KinKal in the muse workdir .The KinKal development model is the same as Offline: start with the head of main, create your own branch, develop and commit to that, and make a PR to KinKal when your development is ready.
mu2einit
* checkout tag v0.1.4 of KinKal_to_UPS
setup codetools
muse setup -q unnn:debug
muse build -j 8
</pre>
On mu2ebuild02 you may change the 8 to 32.


* build KinKal according to the instructions in READMEmake sure to run the test (make test)
This will make a debug build of KinKal and install in it the local artexternals. Then it will do a debug build of Offline and any other repos you cloned in step 3If you have not modified KinKal since you first executed step 6, the build of KinKal will be fast because there is no work to do.


* create the directory 'artexternals' in the muse workdir
===What if you update Offline?===
* execute 'muse setup -q (prof, debug) depending on what you want.  Note you can have both builds in the same workdir, but any given shell can be only one or the other.
* invoke KinKal_to_UPS/build -v your_version -i -b -j10, where your_version is whatever version you want (it is temporary).  I have this command saved in a script /mu2e/app/users/brownd/KFTrack/install_KinKal.sh
* define a user envset in the ./muse directory.  mine is /mu2e/app/users/brownd/KFTrack/muse/u002 The name is unimportant.  Edit that so it refers to your_version of KinKal


Then, close that shellFrom then on, you can work with KinKal and/or Offline in this muse workdir with the following commands:
If you update the version of Offline in your working area the first step is to compare the old and new versions of Offline
* create a new shell, and cd to your muse workdir
to see if the envset specified in Offline/.muse has changedIf it has not changed, there are no additional steps and you can proceed as described in
* exectue 'export PRODUCTS=${PWD}/artexternals:${PRODUCTS}'  This tells UPS to look for KinKal in your local install
[[#Returning to the area]].
* execute 'muse setup -q (prof, debug) your_envset'
 
(I have these defined as  /mu2e/app/users/brownd/KFTrack/setup_prof.sh and setup_debug.sh in my area)'
If it has changed, do the folllowing in a clean shell.  In this example the new envset is named pdef.
* Any time you change KinKal rebuild and rerun the tests, and then rerun install_KinKal.sh
 
* Any time you change Mu2eKinKal (or after changing and rebuilding KinKal as above) rebuild Offline using 'muse build'
<ol>
<li> Setup the environment:
<pre>
cd 'myworkdir'
mu2einit
setup codetools
</pre>
<li> Choose a new version number for the UPS version of KinKal, say 9.9.1. and repeat step 6</li>
<pre>
kk2ups -v "99.9.1" -b -i -m "" -j 8
</pre>
There is no need to specify the new envset because kk2ups will pick it up from Offline/.muse.
</li>
<li> Choose a new name for your modified envset, say u047.  
<li> Repeat steps 9 and 10 using the new envset name, pdef, the new KinKal version 9.9.1 and the new modifed envset name u047
<li> In step 11 use u047 instead of u046.
</ol>
When this work is completed you will see both versions of KinKal in artexternals and both builds of Offline in your build subdirectory.  If do not expect to return to the old builds it is safe to delete them.

Latest revision as of 13:27, 26 July 2024

Local KinKal development with Muse

Introduction

These instructions only work on SL7/UPS, not on AL9/Spack.

This section describes how to do simultaneous development of KinKal and Offline. Because KinKal uses a different build system than does Offline, you need to take a few additional steps when you start. Once you have taken these steps "muse build" will first build KinKal, but only if necessary, and install it into a local UPS area; it will then build Offline using KinKal from the the local UPS area.

This writeup assumes that you have a basic knowledge of UPS and of Muse; in particular you should understand what a Muse envset is and how to use it. Normally you will choose the envset recommended by Offline and this example is written assuming that's what you want to do. If you are new to this work and you need to use a different envset, your mentor will tell you which one to use. Section #Using An Alternate envset describes how the workflow must be changed in order to use a different envset.

Initial build

  1. In a clean shell, create a Muse workDir and cd there
    mkdir 'myworkdir'
    cd 'myworkdir'
    
  2. clone KinKal into the Muse workdir as your would normally. Add the Mu2e KinKal repo as a remote and checkout the main branch of the Mu2e KinKal remote.
    git clone git@github.com:<your GitHub username>/KinKal
    cd KinKal
    git remote add -f mu2e https://github.com/KFTrack/KinKal
    git checkout -b work_branch mu2e/main
    cd ..
    
  3. Clone your fork of Offline into the muse workdir as you would normally. Add the Mu2e Offline repo as a remote and checkout the main branch of the Mu2e Offline remote. If you need other muse-aware repos (Production, TrkAna, ...) for your workflow, you can add them too
    git clone git@github.com:<your GitHub username>/Offline
    cd Offline
    git remote add -f mu2e https://github.com/Mu2e/Offline
    git checkout -b work_branch mu2e/master
    cd ..
    # Optional: repeat the above pattern for any of Production, TrkAna ...
    
  4. Setup the Mu2e development environment
    mu2einit
    setup codetools
    
  5. Choose a UPS version number for your local build of KinKal. The number will have no meaning outside of your muse working directory so you can use any number that is not already in use. Choosing version 99.9.0 is likely to be safe for a long time to come. The version number must have 3 dot separated fields.
  6. Build KinKal; create a local ups directory and install the build of KinKal into that UPS area.
    kk2ups -v "99.9.0" -b -i -m "" -j 8
    

    On mu2ebuild02 you may increase 8 to 32. This command will build both the profile and debug versions of KinKal. The option -m with an empty string tells Kkk2ups to choose the version of root that matches the default for building Offline. See section #Using An Alternate envset for when you should provide a non-empty string.

  7. If everything worked correctly, the output of this command will end with
    Begin install.
    Begin install of prof version.
    Begin install of debug version.
    KinKal_to_UPS/build completed with status 0
    
  8. Look at the files created by kk2ups:
    ls artexternals/KinKal/
    

    This will produce the output:

    v99_09_00  v99_09_00.version
    

    Also do

    ls artexternals/KinKal/v99_09_00
    

    This will produce output similar to:

    include  slf7.x86_64.debug.e20.p3915  slf7.x86_64.e20.p3915.prof  source  ups
    

    As Mu2e Offline evolves to newer versions of g++ and python, the qualifiers e20 and p3915 will change.

  9. Look at Offline/.muse to find the name of the default envset for building Offline. In these instructions we will call that pxyz. Make a local muse subdirectory and make a copy of pxyz inside of it.
    mkdir muse
    cd muse
    cp /cvmfs/mu2e.opensciencegrid.org/DataFiles/Muse/pxyz unnn
    

    where unnn is the name of your copy envset, for example u046. The name unnn has no meaning outside of your muse working directory.

  10. Edit the envset unnn to make two changes
    1. Find the line that sets up KinKal and replace the version number with v99_09_00
         setup KinKal v99_09_00  -q +${MUSE_BUILD}:+${MUSE_COMPILER_E}:+${MUSE_PYTHON}'
         
    2. Add the following line after the last setup command:
       export MUSE_PREBUILD="kk2ups -v \"99.9.0\" -b -i -j 24" 

      This line is not the same as the command given in step 6; it omits the -m argument. When muse executes this command a version of root will already be setup in your environmen and kk2ups will use that version of root.

  11. cd back to the muse working directory and setup muse using the envset you just created
    cd ..
    muse setup -q unnn
  12. Build Offline and any other repos that you cloned in step 3; if anything has changed in KinKal since the last build, this command will also rebuild KinKal and reinstall it in the local artexternals.
    muse build -j 8 
    On mu2ebuild02 you may increase 8 to 32.
  13. Now you can edit files in any of KinKal, Offline and any other locally cloned repos. When you want to rebuild you can do so with a single command:
    muse build -j 8 
    On mu2ebuild02 you may increase 8 to 32.

About kk2ups

  1. The command kk2ups is short for "KinKal to UPS" and is found in codetools. The command you issued in step 6 will
    1. (-b) build the existing checkout in the local clone of KinKal
    2. (-i) if necessary, create a local directory named artexternals, configure it as a UPS repositor
    3. (-i) copy the build of KinKal into artexternals/KinKal/v99_09_00 and configure it as a UPS product.
  2. The full syntax of the kk2ups option -m is: -m "args", where args is will be given as arguments to muse setup. For example to request envset pabc
    kk2ups -v "99.9.0" -b -i -m "-q pabc" -j 8
    

    Internally kk2ups looks up the version of root that is chosen by "muse setup $args" and uses that version of root to build KinKal. In step 6, args is an empty string, which tells kk2ups to use the default envset. Because you have a clone of Offline in your Muse working area, the default envset is that specified by Offline/.muse.

  3. kk2ups has an online help feature:
    kk2ups -?
    
  4. To learn more about kk2ups you can read https://github.com/Mu2e/codetools/blob/main/KinKal_to_UPS/README.md.

Using An Alternate envset

If you need to use an alternative envset, you need to modify two steps in the above procedure. In this example, the alternate envset is named pabc:

  • In step 6, supply the alternate envset as the value of the -m argument to kk2ups
    kk2ups -v "99.9.0" -b -i -m "-q pabc" -j 8
    
  • In step 10.1, make a copy of the alternate envset
    mkdir muse
    cd muse
    cp /cvmfs/mu2e.opensciencegrid.org/DataFiles/Muse/pabc unnn
    

Be sure to use the same envset in both places.

Rebuilding KinKal

In earlier versions of this workflow there were explicit steps required to rebuild KinKal when needed. These steps are now done automatically/


Returning to the area

If you want to restart work in a new shell, follow these steps:

cd 'workdir'
mu2einit
setup codetools
muse setup -q unnn

where unnn is the envset you created during the initial build. You can then edit files and build as needed.


Adding debug build

Due to the way that UPS works, it is not possible to work on both prof and debug builds in the same shell. You need to do each in a separate shell.

To add a debug build to an existing prof build, start a clean shell and:

cd 'myworkdir'
mu2einit
setup codetools
muse setup -q unnn:debug
muse build -j 8

On mu2ebuild02 you may change the 8 to 32.

This will make a debug build of KinKal and install in it the local artexternals. Then it will do a debug build of Offline and any other repos you cloned in step 3. If you have not modified KinKal since you first executed step 6, the build of KinKal will be fast because there is no work to do.

What if you update Offline?

If you update the version of Offline in your working area the first step is to compare the old and new versions of Offline to see if the envset specified in Offline/.muse has changed. If it has not changed, there are no additional steps and you can proceed as described in #Returning to the area.

If it has changed, do the folllowing in a clean shell. In this example the new envset is named pdef.

  1. Setup the environment:
    cd 'myworkdir'
    mu2einit
    setup codetools
    
  2. Choose a new version number for the UPS version of KinKal, say 9.9.1. and repeat step 6
  3. kk2ups -v "99.9.1" -b -i -m "" -j 8
    

    There is no need to specify the new envset because kk2ups will pick it up from Offline/.muse.

  4. Choose a new name for your modified envset, say u047.
  5. Repeat steps 9 and 10 using the new envset name, pdef, the new KinKal version 9.9.1 and the new modifed envset name u047
  6. In step 11 use u047 instead of u046.

When this work is completed you will see both versions of KinKal in artexternals and both builds of Offline in your build subdirectory. If do not expect to return to the old builds it is safe to delete them.