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To develop new code in KinKal and call it in Offline you will need to define your own version of KinKal and install it in your own private extension to UPSYou need to do some initial setup in a throwaway shell:
==Local KinKal development with Muse==
* create a [[Muse]] workDir and cd there
 
  <pre>
===Introduction===
setup mu2e
 
setup muse
<font color=red size=+1>These instructions only work on SL7/UPS, not on AL9/Spack.</font>
 
This section describes how to do simultaneous development of KinKal and Offline.  Because KinKal uses a different build system than does Offline, you need to take a few additional steps when you start.  Once you have taken these steps "muse build" will first build KinKal, but only if necessary, and install it into a local UPS area; it will then build Offline using KinKal from the the local UPS area.
 
This writeup assumes that you have a basic knowledge of [[UPS]] and of [[Muse]]; in particular you should understand what a Muse envset is and how to use it.  Normally you will choose the envset recommended by Offline and this example is written assuming that's what you want to doIf you are new to this work and you need to use a different envset, your mentor will tell you which one to use.  Section  [[#Using An Alternate envset]] describes how the workflow must be changed in order to use a different envset.
 
===Initial build===
 
<ol>
<li>  In a clean shell, create a [[Muse]] workDir and cd there
<pre>
mkdir 'myworkdir'
cd 'myworkdir'
</pre> </li>
<li>clone KinKal into the Muse workdir as your would normally. Add the Mu2e KinKal repo as a remote and checkout the main branch of the Mu2e KinKal remote.
<pre>
git clone git@github.com:<your GitHub username>/KinKal
cd KinKal
git remote add -f mu2e https://github.com/KFTrack/KinKal
git checkout -b work_branch mu2e/main
cd ..
</pre>
</pre>
* checkout your fork of Offline in the muse workdir as you would normally
</li>
<li> Clone your fork of Offline into the muse workdir as you would normally.  Add the Mu2e Offline repo as a remote and checkout the main branch of the Mu2e Offline remote.  If you need other muse-aware repos (Production, TrkAna, ...) for your workflow, you can add them too
<pre>
<pre>
git clone git@github.com:<your GitHub username>/Offline
git clone git@github.com:<your GitHub username>/Offline
Line 13: Line 34:
git checkout -b work_branch mu2e/master
git checkout -b work_branch mu2e/master
cd ..
cd ..
# Optional: repeat the above pattern for any of Production, TrkAna ...
</pre></li>
<li> Setup the Mu2e development environment
<pre>
mu2einit
setup codetools
</pre> </li>
<li> Choose a UPS version number for your local build of KinKal.  The number will have no meaning outside of your muse working directory so you can use any number that is not already in use. Choosing version 99.9.0 is likely to be safe for a long time to come.  The version number must have 3 dot separated fields.</li>
<li> Build KinKal; create a local ups directory and install the build of KinKal into that UPS area.
<pre>
kk2ups -v "99.9.0" -b -i -m "" -j 8
</pre>
On mu2ebuild02 you may increase 8 to 32.  This command will build both the profile and debug versions of KinKal.  The option -m with an empty string tells Kkk2ups to choose the version of root that matches the default for building Offline. See section [[#Using An Alternate envset]] for when you should provide a non-empty string.
</li>
<li> If everything worked correctly, the output of this command will end with
<pre>
Begin install.
Begin install of prof version.
Begin install of debug version.
KinKal_to_UPS/build completed with status 0
</pre>
</li>
<li> Look at the files created by kk2ups:
<pre>
ls artexternals/KinKal/
</pre>
This will produce the output:
<pre>
v99_09_00  v99_09_00.version
</pre>
Also do
<pre>
ls artexternals/KinKal/v99_09_00
</pre>
</pre>
This will produce output similar to:
<pre>
include  slf7.x86_64.debug.e20.p3915  slf7.x86_64.e20.p3915.prof  source  ups
</pre>
As Mu2e Offline evolves to newer versions of g++ and python, the qualifiers e20 and p3915 will change.
</li>
<li> Look at Offline/.muse to find the name of the default envset for building Offline. In these instructions we will call that pxyz.  Make a local muse subdirectory and make a copy of pxyz inside of it.
<pre>
mkdir muse
cd muse
cp /cvmfs/mu2e.opensciencegrid.org/DataFiles/Muse/pxyz unnn
</pre>
where unnn is the name of your copy envset, for example u046.  The name unnn has no meaning outside of your muse working directory.
</li>
<li>  Edit the envset unnn to make two changes
  <ol>
    <li> Find the line that sets up KinKal and replace the version number with v99_09_00
  <pre>
  setup KinKal v99_09_00  -q +${MUSE_BUILD}:+${MUSE_COMPILER_E}:+${MUSE_PYTHON}'
  </pre>
  </li>
  <li> Add the following line after the last setup command:
    <pre> export MUSE_PREBUILD="kk2ups -v \"99.9.0\" -b -i -j 24" </pre>
This line is not the same as the command given in step 6; it omits the -m argument.  When muse executes this command a version of root will already be setup in your environmen and kk2ups will use that version of root.
  </li>
  </ol>
<li> cd back to the muse working directory and setup muse using the envset you just created
  <pre>cd ..
muse setup -q unnn</pre>
<li> Build Offline and any other repos that you cloned in step 3; if anything has changed in KinKal since the last build, this command will also rebuild KinKal and reinstall it in the local artexternals.
  <pre>muse build -j 8 </pre>
  On mu2ebuild02 you may increase 8 to 32.</li>
<li> Now you can edit files in any of KinKal, Offline and any other locally cloned repos. When you want to rebuild you can do so with a single command:
  <pre>muse build -j 8 </pre>
  On mu2ebuild02 you may increase 8 to 32.</li>
</ol>
====About kk2ups ====
<ol>
<li> The command kk2ups is short for "KinKal to UPS" and is found in codetools.  The command you issued in step 6 will
<ol>
  <li> (-b) build the existing checkout in the local clone of KinKal
  <li> (-i) if necessary, create a local directory named artexternals, configure it as a UPS repositor
  <li>  (-i) copy the build of KinKal into artexternals/KinKal/v99_09_00 and configure it as a UPS product.
  </ol>
</li>


* checkout your fork of KinKal in the muse workdir .The KinKal development model is the same as Offline: start with the head of main, create your own branch, develop and commit to that, and make a PR to KinKal when your development is ready.
<li> The full syntax of the kk2ups option -m is: -m "args", where args is will be given as arguments to muse setup.  For example to request envset pabc
<pre>
kk2ups -v "99.9.0" -b -i -m "-q pabc" -j 8
</pre>
Internally kk2ups looks up the version of root that is chosen by "muse setup $args" and uses that version of root to build KinKal.  In step 6, args is an empty string, which tells kk2ups to use the default envset. Because you have a clone of Offline in your Muse working area, the default envset is that specified by Offline/.muse.
</li>
<li> kk2ups has an online help feature:
<pre>
<pre>
git clone git@github.com:<your GitHub username>/KinKal
kk2ups -?
cd KinKal
git remote add -f mu2e https://github.com/KFTrack/Offline
git checkout -b work_branch mu2e/main
cd ..
</pre>
</pre>
* checkout tag v0.1.4 of KinKal_to_UPS
<li> To learn more about kk2ups you can read [https://github.com/Mu2e/codetools/blob/main/KinKal_to_UPS/README.md https://github.com/Mu2e/codetools/blob/main/KinKal_to_UPS/README.md].
</ol>
 
===Using An Alternate envset===
 
If you need to use an alternative envset, you need to modify two steps in the above procedure.  In this example, the alternate envset is named pabc:
<ul>
<li> In step 6, supply the alternate envset as the value of the -m argument to kk2ups
<pre>
<pre>
git clone https://github.com/Mu2e/KinKal_to_UPS
kk2ups -v "99.9.0" -b -i -m "-q pabc" -j 8
git checkout -b work_branch v0.1.4
</pre></li>
cd ..
<li> In step 10.1, make a copy of the alternate envset
<pre>
mkdir muse
cd muse
cp /cvmfs/mu2e.opensciencegrid.org/DataFiles/Muse/pabc unnn
</pre>
</pre>
</li>
</ul>
Be sure to use the same envset in both places.
===Rebuilding KinKal===
In earlier versions of this workflow there were explicit steps required to rebuild KinKal when needed.  These steps are now done automatically/
===Returning to the area===


* setup Muse
If you want to restart work in a new shell, follow these steps:
muse setup  <-q debug>
this puts a root and other products in the environment, which the KinKal build will detect
* build KinKal according  to the instructions in README.  make sure to run the test (make test)
<pre>
<pre>
mkdir build_profile
cd 'workdir'
cd build_profile
mu2einit
cmake ../KinKal  -DCMAKE_BUILD_TYPE=Release    [or Debug]
setup codetools
make -j 20
muse setup -q unnn
make test
</pre>
</pre>
where unnn is the envset you created during the initial build.  You can then edit files and build as needed.




* create the directory 'artexternals' in the muse workdir
===Adding debug build===
* execute 'muse setup -q (prof, debug) depending on what you want.  Note you can have both builds in the same workdir, but any given shell can be only one or the other.
* invoke KinKal_to_UPS/build -v your_version -i -b -j10, where your_version is whatever version you want (it is temporary).  I have this command saved in a script /mu2e/app/users/brownd/KFTrack/install_KinKal.sh
* define a user envset in the ./muse directory.  mine is /mu2e/app/users/brownd/KFTrack/muse/u002 The name is unimportant.  Edit that so it refers to your_version of KinKal


Then, close that shell.  From then on, you can work with KinKal and/or Offline in this muse workdir with the following commands:
Due to the way that UPS works, it is not possible to work on both prof and debug builds in the same shell. You need to do each in a separate shell.
* create a new shell, and cd to your muse workdir
* exectue 'export PRODUCTS=${PWD}/artexternals:${PRODUCTS}' This tells UPS to look for KinKal in your local install
* execute 'muse setup -q (prof, debug) your_envset'
(I have these defined as  /mu2e/app/users/brownd/KFTrack/setup_prof.sh and setup_debug.sh in my area)'
* Any time you change KinKal  rebuild and rerun the tests, and then rerun install_KinKal.sh
* Any time you change Mu2eKinKal (or after changing and rebuilding KinKal as above) rebuild Offline using 'muse build'


==Original==
To add a debug build to an existing prof build, start a clean shell and:
<pre>
cd 'myworkdir'
mu2einit
setup codetools
muse setup -q unnn:debug
muse build -j 8
</pre>
On mu2ebuild02 you may change the 8 to 32.


To develop new code in KinKal and call it in Offline you will need to define your own version of KinKal and install it in your own private extension to UPSYou need to do some initial setup in a throwaway shell:
This will make a debug build of KinKal and install in it the local artexternalsThen it will do a debug build of Offline and any other repos you cloned in step 3. If you have not modified KinKal since you first executed step 6, the build of KinKal will be fast because there is no work to do.
* create a [[Muse]] workDir and cd there
* checkout your fork of Offline in the muse workdir as you would normally
* checkout your fork of KinKal in the muse workdir .The KinKal development model is the same as Offline: start with the head of main, create your own branch, develop and commit to that, and make a PR to KinKal when your development is ready.
* checkout tag v0.1.4 of KinKal_to_UPS


* build KinKal according  to the instructions in README.  make sure to run the test (make test)
===What if you update Offline?===


* create the directory 'artexternals' in the muse workdir
If you update the version of Offline in your working area the first step is to compare the old and new versions of Offline
* execute 'muse setup -q (prof, debug) depending on what you want.  Note you can have both builds in the same workdir, but any given shell can be only one or the other.
to see if the envset specified in Offline/.muse has changedIf it has not changed, there are no additional steps and you can proceed as described in
* invoke KinKal_to_UPS/build -v your_version -i -b -j10, where your_version is whatever version you want (it is temporary).  I have this command saved in a script /mu2e/app/users/brownd/KFTrack/install_KinKal.sh
[[#Returning to the area]].
* define a user envset in the ./muse directory. mine is /mu2e/app/users/brownd/KFTrack/muse/u002 The name is unimportantEdit that so it refers to your_version of KinKal


Then, close that shell.  From then on, you can work with KinKal and/or Offline in this muse workdir with the following commands:
If it has changed, do the folllowing in a clean shell.  In this example the new envset is named pdef.
* create a new shell, and cd to your muse workdir
 
* exectue 'export PRODUCTS=${PWD}/artexternals:${PRODUCTS}'  This tells UPS to look for KinKal in your local install
<ol>
* execute 'muse setup -q (prof, debug) your_envset'
<li> Setup the environment:
(I have these defined as  /mu2e/app/users/brownd/KFTrack/setup_prof.sh and setup_debug.sh in my area)'
<pre>
* Any time you change KinKal rebuild and rerun the tests, and then rerun install_KinKal.sh
cd 'myworkdir'
* Any time you change Mu2eKinKal (or after changing and rebuilding KinKal as above) rebuild Offline using 'muse build'
mu2einit
setup codetools
</pre>
<li> Choose a new version number for the UPS version of KinKal, say 9.9.1. and repeat step 6</li>
<pre>
kk2ups -v "99.9.1" -b -i -m "" -j 8
</pre>
There is no need to specify the new envset because kk2ups will pick it up from Offline/.muse.
</li>
<li> Choose a new name for your modified envset, say u047.  
<li> Repeat steps 9 and 10 using the new envset name, pdef, the new KinKal version 9.9.1 and the new modifed envset name u047
<li> In step 11 use u047 instead of u046.
</ol>
When this work is completed you will see both versions of KinKal in artexternals and both builds of Offline in your build subdirectory.  If do not expect to return to the old builds it is safe to delete them.

Latest revision as of 13:27, 26 July 2024

Local KinKal development with Muse

Introduction

These instructions only work on SL7/UPS, not on AL9/Spack.

This section describes how to do simultaneous development of KinKal and Offline. Because KinKal uses a different build system than does Offline, you need to take a few additional steps when you start. Once you have taken these steps "muse build" will first build KinKal, but only if necessary, and install it into a local UPS area; it will then build Offline using KinKal from the the local UPS area.

This writeup assumes that you have a basic knowledge of UPS and of Muse; in particular you should understand what a Muse envset is and how to use it. Normally you will choose the envset recommended by Offline and this example is written assuming that's what you want to do. If you are new to this work and you need to use a different envset, your mentor will tell you which one to use. Section #Using An Alternate envset describes how the workflow must be changed in order to use a different envset.

Initial build

  1. In a clean shell, create a Muse workDir and cd there
    mkdir 'myworkdir'
    cd 'myworkdir'
    
  2. clone KinKal into the Muse workdir as your would normally. Add the Mu2e KinKal repo as a remote and checkout the main branch of the Mu2e KinKal remote.
    git clone git@github.com:<your GitHub username>/KinKal
    cd KinKal
    git remote add -f mu2e https://github.com/KFTrack/KinKal
    git checkout -b work_branch mu2e/main
    cd ..
    
  3. Clone your fork of Offline into the muse workdir as you would normally. Add the Mu2e Offline repo as a remote and checkout the main branch of the Mu2e Offline remote. If you need other muse-aware repos (Production, TrkAna, ...) for your workflow, you can add them too
    git clone git@github.com:<your GitHub username>/Offline
    cd Offline
    git remote add -f mu2e https://github.com/Mu2e/Offline
    git checkout -b work_branch mu2e/master
    cd ..
    # Optional: repeat the above pattern for any of Production, TrkAna ...
    
  4. Setup the Mu2e development environment
    mu2einit
    setup codetools
    
  5. Choose a UPS version number for your local build of KinKal. The number will have no meaning outside of your muse working directory so you can use any number that is not already in use. Choosing version 99.9.0 is likely to be safe for a long time to come. The version number must have 3 dot separated fields.
  6. Build KinKal; create a local ups directory and install the build of KinKal into that UPS area.
    kk2ups -v "99.9.0" -b -i -m "" -j 8
    

    On mu2ebuild02 you may increase 8 to 32. This command will build both the profile and debug versions of KinKal. The option -m with an empty string tells Kkk2ups to choose the version of root that matches the default for building Offline. See section #Using An Alternate envset for when you should provide a non-empty string.

  7. If everything worked correctly, the output of this command will end with
    Begin install.
    Begin install of prof version.
    Begin install of debug version.
    KinKal_to_UPS/build completed with status 0
    
  8. Look at the files created by kk2ups:
    ls artexternals/KinKal/
    

    This will produce the output:

    v99_09_00  v99_09_00.version
    

    Also do

    ls artexternals/KinKal/v99_09_00
    

    This will produce output similar to:

    include  slf7.x86_64.debug.e20.p3915  slf7.x86_64.e20.p3915.prof  source  ups
    

    As Mu2e Offline evolves to newer versions of g++ and python, the qualifiers e20 and p3915 will change.

  9. Look at Offline/.muse to find the name of the default envset for building Offline. In these instructions we will call that pxyz. Make a local muse subdirectory and make a copy of pxyz inside of it.
    mkdir muse
    cd muse
    cp /cvmfs/mu2e.opensciencegrid.org/DataFiles/Muse/pxyz unnn
    

    where unnn is the name of your copy envset, for example u046. The name unnn has no meaning outside of your muse working directory.

  10. Edit the envset unnn to make two changes
    1. Find the line that sets up KinKal and replace the version number with v99_09_00
         setup KinKal v99_09_00  -q +${MUSE_BUILD}:+${MUSE_COMPILER_E}:+${MUSE_PYTHON}'
         
    2. Add the following line after the last setup command:
       export MUSE_PREBUILD="kk2ups -v \"99.9.0\" -b -i -j 24" 

      This line is not the same as the command given in step 6; it omits the -m argument. When muse executes this command a version of root will already be setup in your environmen and kk2ups will use that version of root.

  11. cd back to the muse working directory and setup muse using the envset you just created
    cd ..
    muse setup -q unnn
  12. Build Offline and any other repos that you cloned in step 3; if anything has changed in KinKal since the last build, this command will also rebuild KinKal and reinstall it in the local artexternals.
    muse build -j 8 
    On mu2ebuild02 you may increase 8 to 32.
  13. Now you can edit files in any of KinKal, Offline and any other locally cloned repos. When you want to rebuild you can do so with a single command:
    muse build -j 8 
    On mu2ebuild02 you may increase 8 to 32.

About kk2ups

  1. The command kk2ups is short for "KinKal to UPS" and is found in codetools. The command you issued in step 6 will
    1. (-b) build the existing checkout in the local clone of KinKal
    2. (-i) if necessary, create a local directory named artexternals, configure it as a UPS repositor
    3. (-i) copy the build of KinKal into artexternals/KinKal/v99_09_00 and configure it as a UPS product.
  2. The full syntax of the kk2ups option -m is: -m "args", where args is will be given as arguments to muse setup. For example to request envset pabc
    kk2ups -v "99.9.0" -b -i -m "-q pabc" -j 8
    

    Internally kk2ups looks up the version of root that is chosen by "muse setup $args" and uses that version of root to build KinKal. In step 6, args is an empty string, which tells kk2ups to use the default envset. Because you have a clone of Offline in your Muse working area, the default envset is that specified by Offline/.muse.

  3. kk2ups has an online help feature:
    kk2ups -?
    
  4. To learn more about kk2ups you can read https://github.com/Mu2e/codetools/blob/main/KinKal_to_UPS/README.md.

Using An Alternate envset

If you need to use an alternative envset, you need to modify two steps in the above procedure. In this example, the alternate envset is named pabc:

  • In step 6, supply the alternate envset as the value of the -m argument to kk2ups
    kk2ups -v "99.9.0" -b -i -m "-q pabc" -j 8
    
  • In step 10.1, make a copy of the alternate envset
    mkdir muse
    cd muse
    cp /cvmfs/mu2e.opensciencegrid.org/DataFiles/Muse/pabc unnn
    

Be sure to use the same envset in both places.

Rebuilding KinKal

In earlier versions of this workflow there were explicit steps required to rebuild KinKal when needed. These steps are now done automatically/


Returning to the area

If you want to restart work in a new shell, follow these steps:

cd 'workdir'
mu2einit
setup codetools
muse setup -q unnn

where unnn is the envset you created during the initial build. You can then edit files and build as needed.


Adding debug build

Due to the way that UPS works, it is not possible to work on both prof and debug builds in the same shell. You need to do each in a separate shell.

To add a debug build to an existing prof build, start a clean shell and:

cd 'myworkdir'
mu2einit
setup codetools
muse setup -q unnn:debug
muse build -j 8

On mu2ebuild02 you may change the 8 to 32.

This will make a debug build of KinKal and install in it the local artexternals. Then it will do a debug build of Offline and any other repos you cloned in step 3. If you have not modified KinKal since you first executed step 6, the build of KinKal will be fast because there is no work to do.

What if you update Offline?

If you update the version of Offline in your working area the first step is to compare the old and new versions of Offline to see if the envset specified in Offline/.muse has changed. If it has not changed, there are no additional steps and you can proceed as described in #Returning to the area.

If it has changed, do the folllowing in a clean shell. In this example the new envset is named pdef.

  1. Setup the environment:
    cd 'myworkdir'
    mu2einit
    setup codetools
    
  2. Choose a new version number for the UPS version of KinKal, say 9.9.1. and repeat step 6
  3. kk2ups -v "99.9.1" -b -i -m "" -j 8
    

    There is no need to specify the new envset because kk2ups will pick it up from Offline/.muse.

  4. Choose a new name for your modified envset, say u047.
  5. Repeat steps 9 and 10 using the new envset name, pdef, the new KinKal version 9.9.1 and the new modifed envset name u047
  6. In step 11 use u047 instead of u046.

When this work is completed you will see both versions of KinKal in artexternals and both builds of Offline in your build subdirectory. If do not expect to return to the old builds it is safe to delete them.