ComputingLogin: Difference between revisions
No edit summary |
|||
(147 intermediate revisions by 7 users not shown) | |||
Line 1: | Line 1: | ||
==Introduction== | ==Introduction== | ||
Fermilab maintains several machines for interactive login by Mu2e members. | Fermilab maintains several machines for interactive login by Mu2e members. Typically all interactive work would be done on the mu2evm ([https://ssiwiki.fnal.gov/wiki/Interactive_Server_Facility GPCF]) nodes. This web page describes how to log in to these machines and and a few others. We support the [[Shells|bash shell]] exclusively. | ||
If you cannot find the information you need on this page, please | |||
# Remember to check the [[ComputingLogin#Documentation Supported by other Organizations | section on documentation supported by other organizations]] | |||
# Look at the [[ComputingHelp|Mu2e Computing Help page]] which contains links to additional material. | |||
==Machines== | ==Machines== | ||
The interactive login nodes come in | The interactive login nodes come in these groups: | ||
* '''mu2egpvm01''' through '''mu2egpvm07''' | |||
** This is a pool of virtual machines within the [https://ssiwiki.fnal.gov/wiki/Interactive_Server_Facility General Purpose Computing Farm (GPCF)], the main interactive computing facility for use by the Intensity Frontier experiments. They are identical quad-core virtual machines running the Alma Linux 9 (AL9) operating system. Each VM shares a host server with other VMs, some of which may be assigned to other experiments. | |||
** These machines are intended for developing, compiling and linking jobs and other general purpose uses. You can also run short to moderate jobs here - large jobs should be submitted to the [[SubmitJobs | grid]]. These nodes mount all the [[disks]]. | |||
** You can also access these machines by login into '''mu2evm.fnal.gov'''. This is a load balancer which will forward to one of 01 through 07. | |||
** Monitoring of infrastructure, nightly validation and submission of production jobs (using the mu2epro account) all run on mu2egpvm01. | |||
* '''mu2ebuild02.fnal.gov''' This a 32-core (64 thread) bare metal machine running AL9. It is setup very similarly to the virtual machines. This machine is only for building code (running scons) and running a few simple tests on the build results. It explicitly is '''not''' for running production jobs, analysis, or anything at all that takes more than a few minutes. As soon as anyone uses the machine for running jobs, its purpose as a fast turn-around build machine would be defeated. | |||
* '''mu2edaq01.fnal.gov''' This is a 24-core virtual machine, running AL9, dedicated to developing the DAQ and triggers. Special login permission required. | |||
* '''mu2eimagegpmv01.fnal.gov''' A [https://ssiwiki.fnal.gov/wiki/Container_Build_Service_Home dedicated machine], running [[Docker]] server, for building Docker images. Ask offline management for login permissions. | |||
* '''fnalu.fnal.gov''' This is a legacy machine which we have access to, but it is is only used for a few very specific purposes. | |||
* | * [https://cdcvs.fnal.gov/redmine/projects/fermicloud-openstack/wiki FermiCloud OpenStack Service] Request a custom configured VM; best suited for temporary use. | ||
You can only log in to the above nodes if you have a Fermilab [[ComputingAccounts | You can only log in to the above nodes if you have a Fermilab computing account and accounts on the Mu2e interactive machines. See [[ComputingAccounts]]. The only permitted access method is '''ssh''' authenticated with a '''kerberos''' ticket, as described more below. | ||
==Logging in from Linux or Mac's== | ==Logging in from Linux or Mac's== | ||
If you are running a Fermilab SL distribution or are using a Fermilab maintained Mac, your /etc/krb5.conf file will be correct. In all other cases update your krb5.conf with the [https://metrics.fnal.gov/authentication/krb5conf/ Fermlab recommended krb5.conf]; this page requires | |||
[[ComputingLogin#VPN|VPN]] for access. Anyone can apply for [[#VPN]] access but it takes a few days so we recommend that you ask a colleague to send your their known-good /etc/krb5.conf file and install it on your machine. | |||
From a Unix or Mac system you need to issue the following commands to log into one of the Fermilab interactive machines: | From a Unix or Mac system you need to issue the following commands to log into one of the Fermilab interactive machines: | ||
> kinit -l 6d -f | > kinit -l 6d -f [username@FNAL.GOV] | ||
> ssh -AKX -l your_kerberos_principal mu2egpvm01.fnal.gov | > ssh -AKX -l your_kerberos_principal mu2egpvm01.fnal.gov | ||
An alternate form of the last line is: | |||
> ssh -AKX your_kerberos_principal@mu2egpvm01.fnal.gov | |||
The -f argument to kinit requests a forwardable kerberos ticket; this means that when you are logged in to your target machine you can request services that ask for kerberos authentication. Otherwise you just have permission to get into the machine, not to get further authorization once there. The -AK argument to ssh requests ssh to forward your forwardable ticket. The X argument might or might not be necessary: see the next section. | The -f argument to kinit requests a forwardable kerberos ticket; this means that when you are logged in to your target machine you can request services that ask for kerberos authentication. Otherwise you just have permission to get into the machine, not to get further authorization once there. The -AK argument to ssh requests ssh to forward your forwardable ticket. The X argument might or might not be necessary: see the next section. | ||
If your username on your desktop/laptop is he same as your kerberos principal, you may omit the "-l your_kerberos_principal". | If your username on your desktop/laptop is he same as your kerberos principal, you may omit the "-l your_kerberos_principal" or the "your_kerberos_principa@". | ||
You can change the default behaviour of your ssh using the file <code>~/.ssh/config</code> . We recommend adding the following lines: | |||
<pre> | |||
Host mu2e* | |||
GSSAPIAuthentication yes | |||
GSSAPIDelegateCredentials yes | |||
ForwardAgent yes | |||
ForwardX11Trusted yes | |||
ForwardX11 yes | |||
</pre> | |||
On most systems this will let you drop the explicit -AKX arguments. If your username on your laptop is the same as your kerberos principal, then the command is reduced to: | |||
> ssh mu2egpvm01.fnal.gov | |||
To learn more about the file <code>~/.ssh/config</code> google it. I found this one useful: https://linuxize.com/post/using-the-ssh-config-file . | |||
===Mac OpenGL 3D Error=== | |||
When using OPEN GL based 3D event displays on MAC OS some | |||
people will get an error message containing | |||
the string "cannot load swrast driver". When this occurs | |||
no graphics is produced. The specific | |||
circumstances in which this error has been observed are: | |||
<ul> | |||
<li> You are working on a Mac laptop or desktop. | |||
<li> You are logged into one of the Mu2e linux machines ( for example one of the mu2egpvm machines ). | |||
<li> You are running a graphics program on the linux machine that opens a graphics window on your display. | |||
<li> Your Mac is using XQuartz installed as its X11 server and the version is at least 2.7.10. | |||
<li> Two cases in which this error has been seen are: | |||
<ul> | |||
<li> using the Geant4 based event display ( see the g4test_01.fcl example on the [http://mu2e.fnal.gov/atwork/computing_retired/g4fwk.shtml G4 instructions page]. | |||
<li> using the [http://mu2e.fnal.gov/atwork/computing_retired/Tutorials/2016/GeometryBrowsing/index.shtml ROOT based geometry browser]. | |||
</ul> | |||
</ul> | |||
<p> | |||
The most general solution is: | |||
<ol> | |||
<LI> Quit XQuartz. | |||
<li> Open a fresh Terminal window and issue the command </li> | |||
<b>defaults write org.macosforge.xquartz.X11 enable_iglx -bool true</b> | |||
<li> Restart XQuartz and open a new Terminal window (either from the Applications menu or using the cmd-N keyboard shortcut). ( It is different from the default Mac Terminal - it is really an xTerm. ) | |||
<li> Use this xTerm window to login to a mu2egpvmxx machine: </li> | |||
<b> ssh -KAX userID@mu2egpvmxx.fnal.gov</b> | |||
where userID is of course your own user ID. | |||
<li> Your 3D graphics should now work, although you may still see an initial complaint. | |||
</ol> | |||
In the error message, "swrast" refers to software rasterization. Depending | |||
on the details of your computer, you may have a high end graphics card | |||
capable of hardware rasterization of 3D graphics. If you do not, then | |||
X11 installation needs to do software rasterization of 3D graphics | |||
(which will work but will be slower). | |||
If you have both a low and and a high end graphics card, your Mac normally automatically | |||
switches between the two (it uses the low end card when it can in order to | |||
save energy ). However there is a bug in the automatic switching that leads | |||
to the same error as seen above. In this case a possible solution | |||
is to disable automatic switching and to always use the high end card. | |||
The instructions for this are: | |||
<ol> | |||
<li> To see if you have video cards: open up the Apple Menu and chose “About This Mac”. Click on “System Report”. In the left hand sidebar click on Graphics/Displays. On my machine this shows:</li> | |||
AMD Radeon R9 M370X | |||
Intel Iris Pro | |||
The first is the more powerful video card; the second is the default on-chip video “card”. | |||
<li> If you see only one video card then these instructions are not useful; use the instructions above. | |||
<li> Go to the System Preferences (Gear icon) and choose energy saver. At the top is a check box for automatic graphics switching. Uncheck the box. | |||
<li> Log out of the remote linux machine; restart XQuartz; log in again into the remote linux machine and retry. | |||
</ol> | |||
===Note on Mac's=== | |||
* MacOS 11, Big Sur, was released Nov 12, 2020. See [[#Known_Issues_with_MacOS_11.2C_Big_Sur]] for a description of known issues. | |||
* To log into to the Mu2e interactive machines at Fermilab, you may need to download and install the [https://metrics.fnal.gov/authentication/krb5conf/ Fermilab recommended /etc/krb5.conf] (requires [[ComputingLogin#VPN|VPN]] for access) and consult the web page with suggestions on [https://cdcvs.fnal.gov/redmine/projects/admin/wiki/SSH how to resolve ssh problems]. Be aware there is a ticket cache and a "Ticket Viewer". | |||
** Any time that you upgrade your OS you must check whether or not the upgrade overwrote /etc/krb5.conf; if necessary restore it from the link above. | |||
* Starting Wed, Nov 4, 2020, any Mac computer running macOS High Sierra (v10.13) will be blocked from accessing the Fermilab network until the machine is upgraded; all earlier versions of Mac OS are already blocked. | |||
* Mac OS X users can acquire the X.Org X Window System disk image at [https://www.xquartz.org xquartz.org]. | |||
* For most general Mac questions the best source of information is the Fermilab mailing list, MACUSERS@listserv.fnal.gov. See [https://listserv.fnal.gov] to subscribe. The list is archived at: [https://listserv.fnal.gov/scripts/wa.exe?A0=MACUSERS] . The lab also has a MAC_ANNOUNCE list that is archived at [https://listserv.fnal.gov/scripts/wa.exe?A0=MAC_ANNOUNCE] . | |||
* The lab goes through a process to determine if a new OS meets the lab’s security baseline; the process typically takes a few to 6 months. During this time Fermilab owned Macs will not be upgraded to the new OS but personal or university owned Macs with the new OS are permitted at the lab. The most common issue is forgetting to configure [https://metrics.fnal.gov/authentication/krb5conf/ /etc/krb5.conf] ( requires [[ComputingLogin#VPN|VPN]] for access). For other issues consult the MACUSERS mailing list, described above. | |||
* If you use Scientific Linux Fermi (SLF) it is normally configured so that when you use ssh on your laptop to log in to a remote node ( like one of the GPCF nodes), software running on that remote node is permitted to open a new window on your laptop display. If this does not work, add the -X or -Y options to your ssh command: | |||
> ssh -X -AK -l your_kerberos_principal mu2egpvm01.fnal.gov | |||
===XQuartz Beta Release 2.8.0=== | |||
If you install this release, read the instructions carefully. The install requires a reboot but many people miss that. The result is login sessions that hang. | |||
=== Monterey === | |||
Update 12/2022: On MacOS Big Sur (and apparently also Monterey), if you want to use kinit on the command line, you need to explicitly configure where the ticket cache is; in .bashrc, | |||
export KRB5CCNAME=KCM:uid. See also [http://kb.mit.edu/confluence/pages/viewpage.action?pageId=4981397 MIT]. | |||
=== Big Sur=== | |||
Update 9/2023, from the lab: Starting Tuesday, Oct. 31, 2023, any Mac computer running macOS Big Sur (v11) will be blocked from accessing the Fermilab network. Fermilab-owned computers, by laboratory policy, must run vendor-supported operating systems to avoid security risks. | |||
Update 12/2022: On MacOS Big Sur, if you want to use kinit on the command line, you need to explicitly configure where the ticket cache is; in .bashrc, | |||
export KRB5CCNAME=KCM:uid. See also [http://kb.mit.edu/confluence/pages/viewpage.action?pageId=4981397 MIT]. | |||
Update Feb 23, 2021: I have not heard anything about this in a long time. I expect that it has been solved but I have not heard a conclusive answer. | |||
MacOS 11, Big Sur, was released Nov 12, 2020. There is one known issue. | |||
One user has reported that out of the box OpenGL does not work correctly. This affects some of our event displays and geometry browsers and probably some other ROOT based graphics. The ROOT team is aware of the issue and is working with a member of SCD to resolve the issue. | |||
The lab’s Mac support team has said that this is out of the scope of their expertise but they did provide some information: | |||
<nowiki> | |||
A few years ago Apple announced that macOS would move away from OpenGL in favor of the Apple created Metal. At that time it was only mentioned that it would be removed in a “future OS”. From memory OpenGL and OpenCL were deprecated with macOS Mojave v10.14. I have seen references online that macOS Catalina does sill have it, but it remains stuck at v4.1 (2010) and will throw error messages when building. | |||
Looking online, it appears that OpenGL still exists in macOS Big Sur according to this Apple Developer article https://developer.apple.com/documentation/xcode/porting_your_macos_apps_to_apple_silicon | |||
From the article: | |||
If your app uses Metal, OpenGL, or OpenCL, be aware of the following differences: | |||
• The GPU and CPU on Apple silicon share memory. | |||
• OpenGL is deprecated, but is available on Apple silicon. | |||
• OpenCL is deprecated, but is available on Apple silicon when targeting the GPU. The OpenCL CPU device is not available to arm64 apps. | |||
You may need to research a little more to see what you need to do to include OpenGL with your builds | |||
</nowiki> | |||
===Mojave=== | |||
[https://discussions.apple.com/thread/252808834 Mojave Security Update 2021-004 broke Kerberos for me] | |||
Mojave will be blocked from the Fermilab network starting Oct 22, 2021. | |||
===Anaconda=== | |||
* | Installing the anaconda python analysis package can interfere with shell operation and kerberos. [https://mu2e-hnews.fnal.gov/HyperNews/Mu2e/get/HELPBug/429.html hypernews]. Here's an overview from experience with Big Sur: | ||
* it changed the default kinit to a conda version, which fails (gssapi-etc)</li> | |||
* it switches you to the zsh (your prompt will probably change)</li> | |||
Ask "which kinit" or echo $SHELL to see if that's the problem. /usr/bin/yourname not anything with anaconda or conda in it! | |||
Adding "conda deactivate" as the last line of your .bashrc doesn't do the trick; you still end up in the zshell. I added conda deactivate as the last line of my .zshrc (which it created) and left it in my .bashrc and all was well. There may well be more intelligent ways to do this. You can conda activate later. | |||
* https://uscms.org/uscms_at_work/physics/computing/getstarted/uaf.shtml#MacBigSur has useful information </li> | |||
In one case none of the above worked to restore ssh functionality following installation of anaconda. The solution was to use the -v (verbose) option on ssh. Why this worked is not understood but we have a guess: verbose mode enables debugging and it tries addition options if the first attempts fail. Presumably this modified some sticky state that had been polluted by the Anaconda kerberos. | |||
Added Sept 19, 2024: I was told that adding this line to krb5.conf | |||
default_ccache_name = API: | |||
will allow us to access Fermilab machines using both regular and anaconda kinit. If you do try this please comment on the Mu2e slack about success or failure. | |||
===Networking connection 6/2022=== | |||
I just came to Fermilab for the first time in a month or two, and my computer would not connect to the internet. It would connect to fgz, but then DNS wouldn’t work. It’s been registered for almost five years and it always works. | |||
Like I said, this stumped the Help Desk. I started poking around, and if you open network preferences, there’s a new option (or at least I don’t recall ever seeing it) called “Limit IP Address Tracking”. I unchecked this and it immediately started working. | |||
===Catalina=== | |||
Because it was declared end-of-life, Catalina (v10.15) was blocked from the Fermilab network on 10/28/22. | |||
===Ventura=== | |||
4/2023 from Rob: I recently upgraded my lab Mac laptop to Ventura, upgraded XCode to version 14 and root to v6.28/00. Root worked properly for viewing histograms and browsing TTrees. However, there are two issues: | |||
#Using the GeometryBrowser I can't get the OGL view to work, only the default wireframe view. | |||
#When I use #include within a .C file to include code to be compiled, root cannot find the #included file; true even with ROOT_INCLUDE_PATH set what I believe is correctly. | |||
I upgraded to root 6.28/02. Still not luck. I also tried the homebrew install and got a random old version that did not work. | |||
I spoke with Philippe Canal earlier this afternoon who told me that the root team is aware of issues with root on Ventura and are working on them. They will be fixed in an upcoming release. Many things are fixed in the head of root if anyone wants to build it on their own. I will wait for a new release. | |||
Update 5/8/23 from Rob: The workaround is to install an older root, v6.26.10. I useed the root distribution tar.gz file for Mac OS 13.0 and Code 14, even though I am running Mac OS 13.3.1. It's working. Today Axel Naumann announced the release of root 6.28/04 with support for gcc 13, Xcode 14 and macOS 13.3 (Ventura). I have asked Kyle to provide an art suite with this root. | |||
==Logging in From PC's== | ==Logging in From PC's== | ||
Line 71: | Line 223: | ||
Fermilab does not officially support logging in to one of the Mu2e interactive nodes from a PC. We are trying to change this. Your options are: | Fermilab does not officially support logging in to one of the Mu2e interactive nodes from a PC. We are trying to change this. Your options are: | ||
*The current recommended option is to use [http:// | *The current recommended option is to use [http://www.putty.org/ puTTy] ssh client and [http://www.straightrunning.com/XmingNotes/ xming] xwindows server. Unoffical but helpful links: [http://www.uscms.org/uscms_at_work/physics/computing/getstarted/uaf.shtml CMS doc] [http://www.geo.mtu.edu/geoschem/docs/putty_install.html link] [http://laptops.eng.uci.edu/software-installation/using-linux/how-to-configure-xming-putty link] [http://home.fnal.gov/~prebys/misc/AAAreadme/AAA-MS-Windows-X11.html link]. | ||
* | *Another option is to install [http://www.cygwin.com cyqwin] , which provides a Linux-like environment for Windows. Useful instructions can be found here [http://home.fnal.gov/%7Ejamieson/cygwin.html cygwin-instructions]. You can install kerberized ssh in this environment. Consult with the Service Desk to learn how to configure ssh to work correctly. | ||
*The service desk may recommend Reflection software. You can run terminals on a remote linux host and display the terminal and other xwindows on your PC, and use ftp to move files. | *The service desk may recommend Reflection software. You can run terminals on a remote linux host and display the terminal and other xwindows on your PC, and use ftp to move files. | ||
*You can install SLF as a guest virtual OS hosted by your Windows machine. | *You can install SLF as a guest virtual OS hosted by your Windows machine. | ||
*Purchase and install WRQ, which is X-Windows software that runs on PCs; configure it to do kerberized ssh. The Service Desk may be able to help with this configuration because they support WRQ but only for Fermilab employees. You need to pay for WRQ and non-employees are not covered by the Fermilab license. | *Purchase and install WRQ, which is X-Windows software that runs on PCs; configure it to do kerberized ssh. The Service Desk may be able to help with this configuration because they support WRQ but only for Fermilab employees. You need to pay for WRQ and non-employees are not covered by the Fermilab license. | ||
*You can configure your machine for dual boot and install both Linux and Windows. Boot to Linux when you wish to log in to Fermilab. This is very inconvenient if you need to switch from one OS to the other frequently. | *You can configure your machine for dual boot and install both Linux and Windows. Boot to Linux when you wish to log in to Fermilab. This is very inconvenient if you need to switch from one OS to the other frequently. | ||
==Documentation Supported by other Organizations == | |||
The U.S. CMS LHC Physics Center (LPC, based at Fermilab, maintains a page on their wiki with a lot of information logging in to Fermilab machines from many types of laptops and workstations. They have the resources to keep it much more detailed and much more up to date than we do: | |||
https://uscms.org/uscms_at_work/physics/computing/getstarted/uaf.shtml | |||
==Remote Work== | |||
We recommend you install and use, or at least be prepared to use, the lab VPN. For working on the Muse central interactive linux machines (code development and job submission), we recommend using a remote desktop, a VNC. | |||
===Known restrictions=== | |||
When working from offsite, the restrictions are a bit higher. | |||
* Some lab web sites, such as Jenkins and employee services, require you to access the site only through the lab Virtual Private Network (VPN). | |||
* for direct ssh (no VPN) from a remote linux machine to a Muse2 central interactive server, we have observed a limit of no more than 20 ssh connections in a minute. | |||
===VPN=== | |||
Some web pages at the lab are restricted to viewing only on the lab network. If you are offsite and want to access one of these pages, you can use a VPN, which runs on a gateway node, authenticates you, then redirects your web traffic onto the lab network. | |||
Here is the lab [https://v-main-fcc2-1.fnal.gov VPN] (use your services [email] password) and some [https://cdcvs.fnal.gov/redmine/projects/sbndcode/wiki/VPN VPN help]. | |||
As of 8/2019, the VPN requires [https://fermi.servicenowservices.com/kb_view.do?sysparm_article=KB0013046 multi-factor authentication]. There are two forms, a software or RSA form which is good enough for most users, and a yubikey (usb dongle) stronger form for people who need to access personnel and business information. | |||
Most Mu2e people have an RSA App on their phone to generate the "soft token" needed to access Fermilab VPN. If you change to a new phone, you may need to contact the service desk to request a new "verification code" for the app. | |||
If you try click on a link to a service that requires you be on site or on VPN, but your are not, then you will see one of two outcomes. Sometimes you get an error message saying that you must be on site or on VPN. An increasing fraction of the time nothing happens - no error message and your browser does not move from the page it was on. If the latter happens to you, ask a colleague if the page requires on site or VPN. | |||
===<ins>VNC </ins>=== | |||
==== <ins>General information</ins> ==== | |||
VNC stands for Virtual Network Connection. It allows you to run your session on one of Mu2e interactive machines and display | |||
the running session it on your local desktop of laptop. VNC runs in a client-server mode, with client performing only display | |||
functions. Therefore, if you disconnect and reconnect later, you will continue to work in the same session. | |||
VNC handles efficiently the X11-compression and works over the network much faster than a direct SSH connection. | |||
It works well on network connections with ping times up to 200 ms, getting in trouble only if TCP packets start getting lost. | |||
VNC server software is installed on MU2EGPVM* machines. VNC server runs in a user mode - each user starts his own server(s). | |||
The local computer only needs a VNC client and a kerberized SSH installations. | |||
Below are a few links to general VNC tutorials: | |||
*[https://www.realvnc.com/en/ VNC] | |||
*[https://en.wikipedia.org/wiki/Virtual_Network_Computing wikipedia] | |||
*[http://www.stuartellis.name/articles/vnc-on-linux/ tutorial] | |||
==== <ins>Setting up a VNC server</ins> ==== | |||
To set up a VNC server follow these instructions: | |||
<ol> | |||
<li> ssh into one of the <b>mu2egpvm</b> machines (like mu2egpvm04) </li> | |||
<li> once logged in, do: </li> | |||
<pre> | |||
kinit [username@FNAL.GOV] # get Kerberos ticket | |||
vncpasswd # create your VNC server password | |||
</pre> | |||
<li> check already running VNC servers: | |||
<pre> | |||
murat@mu2egpvm02:~>uname -a; ps -efl | grep -i Xvnc | cut -c-120 | |||
Linux mu2egpvm02.fnal.gov 3.10.0-1127.13.1.el7.x86_64 #1 SMP Tue Jun 23 10:32:27 CDT 2020 x86_64 x86_64 x86_64 GNU/Linux | |||
0 S bvitali 3704 1 0 80 0 - 286048 ep_pol Jul18 ? 02:37:19 /usr/bin/Xvnc :6 -auth /nashome/b/bvitali/.Xa | |||
0 S murat 3797 3326 0 80 0 - 28204 pipe_w 17:11 pts/57 00:00:00 grep --color=auto -i Xvnc | |||
0 S mmackenz 3888 1 0 80 0 - 125007 ep_pol Jul31 ? 03:32:25 /usr/bin/Xvnc :23 -auth /nashome/m/mmackenz/. | |||
0 S defelice 4232 1 0 80 0 - 205764 ep_pol Jul17 ? 03:49:00 /usr/bin/Xvnc :08 -auth /nashome/d/defelice/. | |||
0 S zanetti 11491 1 0 80 0 - 65755 ep_pol Sep08 ? 00:00:13 /usr/bin/Xvnc :2 -auth /nashome/z/zanetti/.Xa | |||
0 S mmackenz 14149 1 0 80 0 - 63366 ep_pol Jul17 ? 00:03:11 /usr/bin/Xvnc :1 -auth /nashome/m/mmackenz/.X | |||
0 S bbarton 18286 1 0 80 0 - 77543 ep_pol Jul17 ? 02:33:33 /usr/bin/Xvnc :5 -auth /nashome/b/bbarton/.Xa | |||
0 S chenj 21733 1 0 80 0 - 129571 ep_pol Jul28 ? 06:07:57 /usr/bin/Xvnc :9 -auth /nashome/c/chenj/.Xaut | |||
0 S gianipez 30193 1 0 80 0 - 83661 ep_pol Aug19 ? 00:09:30 /usr/bin/Xvnc :4 -auth /nashome/g/gianipez/.X | |||
0 S huangs 32386 1 0 80 0 - 92075 ep_pol Aug04 ? 03:27:20 /usr/bin/Xvnc :29 -auth /nashome/h/huangs/.Xa | |||
</pre> | |||
In this printout the Xserver ID is the field that immediately follows Xvnc; for example in the last line it is 29. | |||
<li> start your VNC server with unused Xserver ID, for example, use ID=7: | |||
: <b>(make sure you start the VNC server before running any Mu2e-specific setups, having those in ~/.bashrc, for example, might result in a problem!)</b></li> | |||
<pre> | |||
vncserver :7 -name MY_VNC -depth 24 -geometry 1920x1080 -localhost -bs | |||
</pre> | |||
Replace MY_VNC with your kerberos principal. | |||
Using <b>'-localhost'</b> option is a must, the server should be listening to a local port | |||
</ol> | |||
==== <ins>Setting up a VNC client on Linux</ins> ==== | |||
<ol> | |||
<li> return to your local machine </li> | |||
<li> download a vncviewer. There is a multitude of those, for example, [http://tigervnc.org TigerVNC], [https://www.realvnc.com/en/ RealVNC],etc. | |||
Mac OS has a native vncviewer, but it is slower than the others. <b>TigerVNC</b> is the most performant one, we recommend trying it first. | |||
</li> | |||
<li> once you have a VNC viewer installed, on the local machine, start a SSH tunnel connecting the local machine to the remote server:</li> | |||
<b> ssh -v -f -KX -N -L PORT:localhost:PORT <kerberos_username>@mu2egpvm04.fnal.gov </b> | |||
<Br> | |||
'''notes''': | |||
* replace <b>PORT</b> with <b>5900+ID</b> , replace <b>mu2egpvm04</b> with the name of the machine where you started the vncserver. | |||
<li> open the vncviewer and type: <b>localhost:ID</b>, where <b>ID</b> is the same as above, then click "connect"</li> | |||
[[File:Tigervnc_client_start.png]] | |||
<li> you will be asked to enter the password you set on step (3)</li>. | |||
<li> On Macs, see below: this should be 5900+ID!!</li> | |||
</ol> | |||
This is it! you now have acccess to your server that will look like a linux machine. | |||
* to use KDE as a window manager (KDE is better than GNOME, but often GNOME comes as the default) configure <b>~/.Xclients</b> and <b>~/.vnc/xstartup</b> files on the server side | |||
<pre> | |||
# ---------------------------- ~/.Xclients the mode: -rwx--x--x | |||
#!/bin/bash | |||
startkde & | |||
# --------------------------------- ~~/.vnc/xstartup : -rwx--x--x | |||
#!/bin/sh | |||
[ -r /etc/sysconfig/i18n ] && . /etc/sysconfig/i18n | |||
export LANG | |||
export SYSFONT | |||
vncconfig -iconic & | |||
unset SESSION_MANAGER | |||
unset DBUS_SESSION_BUS_ADDRESS | |||
OS=`uname -s` | |||
WINDOWMANAGER=kde | |||
if [ $OS = 'Linux' ]; then | |||
case "$WINDOWMANAGER" in | |||
*gnome*) | |||
if [ -e /etc/SuSE-release ]; then | |||
PATH=$PATH:/opt/gnome/bin | |||
export PATH | |||
fi | |||
;; | |||
esac | |||
fi | |||
export DESKTOP=KDE | |||
if [ -x /etc/X11/xinit/xinitrc ]; then | |||
exec /etc/X11/xinit/xinitrc | |||
fi | |||
if [ -f /etc/X11/xinit/xinitrc ]; then | |||
exec sh /etc/X11/xinit/xinitrc | |||
fi | |||
[ -r $HOME/.Xresources ] && xrdb $HOME/.Xresources | |||
xsetroot -solid grey | |||
# xterm -geometry 80x24+10+10 -ls -title "$VNCDESKTOP Desktop" & | |||
kdeinit4 & | |||
</pre> | |||
==== <ins>Setting up a VNC client on Windows</ins> ==== | |||
* install [http://www.cygwin.com Cygwin] in a minimal configuration, you only need the core, krb5 client and openssh | |||
* copy /etc/krb5.conf from one of the Mu2e interactive nodes to /etc directory of Cygwin installation (requires admin privilege) | |||
wget http://metrics.fnal.gov/authentication/krb5conf/Linux/krb5.conf | |||
* create the following <b>.ssh/config</b> file in the home directory | |||
<pre> | |||
Host * | |||
GSSAPIAuthentication yes | |||
GSSAPIDelegateCredentials no | |||
ForwardX11Trusted yes | |||
</pre> | |||
* start Cygwin | |||
* the rest is the same, as for Linux | |||
==== <ins>Setting up a VNC client on MacOS</ins> ==== | |||
* mostly, the same as on Linux | |||
* to setup an ssh tunnel, run | |||
<b> ssh -v -f -KXY -N -L PORT:localhost:PORT <kerberos_username>@mu2egpvm04.fnal.gov </b> | |||
* now start your client (Chicken etc); use your password; <b>localhost:5900+ID</b> | |||
* when connecting a client, use <b>5900+ID</b> instead of <b>ID</b>, i.e. <b>localhost:5901</b> instead of <b>localhost:1</b> | |||
==== <ins> Few useful scripts on mu2egpvm* nodes</ins> ==== | |||
* check VNC servers running on a given machine, in this example - mu2egpvm01. Look at several (mu2egpvm01-mu2egpvm06), choose the one which is less loaded | |||
<pre> | |||
kinit | |||
ssh YOUR_FNAL_USERNAME@mu2egpvm01.fnal.gov /mu2e/app/users/murat/bin/check_running_vnc_servers | |||
/usr/bin/Xvnc :2 huangs | |||
/usr/bin/Xvnc :22 mchattor | |||
/usr/bin/Xvnc :3 kharrig | |||
/usr/bin/Xvnc :99 murat | |||
/usr/bin/Xvnc :1 merrill | |||
</pre> | |||
* choose the display number which is not used, for this example display=23 would do. Start VNC server and create password: | |||
<pre> | |||
ssh YOUR_FNAL_USERNAME@mu2egpvm01.fnal.gov | |||
/mu2e/app/users/murat/bin/start_vnc_server :23 1920x1080 # 1920x1080 - is the screen size displayed by the server | |||
vncpasswd | |||
</pre> | |||
* kill server running on display :23 : | |||
<pre> | |||
ssh YOUR_FNAL_USERNAME@mu2egpvm01.fnal.gov /mu2e/app/users/murat/bin/kill_vnc_server :23 | |||
</pre> | |||
==== <ins>Comments</ins> ==== | |||
<p> | |||
* <b>you must limit the terminal history scrolling to not more than 10000 lines. Otherwise, the /tmp area on the central machine | |||
: will get filled up and the machine will need to be rebooted.</b> | |||
<p> | |||
* Once in a while, you need to reconnect. When restarting the SSH tunnel on the local machine, don't forget to kill the stale SSH tunnel processes. | |||
: Issue the following command to find those: | |||
<pre> | |||
ps -efl | grep ssh | |||
</pre> | |||
* you can add the following function to your <b>.bashrc</b> and use it to restart the SSH tunnel - it automatically finds and kills stale tunnel processes. | |||
: it is assumed that the used port numbers on local and remote machines are the same and that the server is running within the <b>fnal.gov</b> domain | |||
<pre> | |||
#--------------------------------------------------------------------------------------- | |||
# to restart SSH port tunneling for VNC server running on mu2egpvm04 and using port 5902: | |||
# | |||
# vnc 2 mu2egpvm04 | |||
#---------------------------------------------------------------------------------------- | |||
function vnc () { | |||
display=$1 | |||
host=$2 # assume "$host.fnal.gov" exists | |||
port=`printf "59%02i" $display` # don't forget to check if the port is available | |||
forwarding=$port:localhost:$port | |||
kill -9 `ps -efl | grep ssh | grep $forwarding | awk '{print $4}'` ; | |||
ssh -v -f -X -N -L $forwarding $host.fnal.gov ; | |||
} | |||
</pre> | |||
==== <ins>Known problems</ins> ==== | |||
* AL9: ignore the following diagnostics | |||
<pre> | |||
WARNING: vncserver has been replaced by a systemd unit and is now considered deprecated and removed in upstream. | |||
Please read /usr/share/doc/tigervnc/HOWTO.md for more information. | |||
</pre> | |||
* when you restart the SSH tunnel on a client side, check currently running SSH tunnels, kill the stale ones: | |||
<pre> | |||
[murat@murat01 ~]$ ps -efl | grep ssh | grep "\-L" | |||
1 S murat 344960 1 0 80 0 - 57739 - Feb12 ? 00:00:28 ssh -v -f -XK -N -L 5999:localhost:5999 mu2egpvm06.fnal.gov | |||
1 S murat 345784 1 0 80 0 - 57745 - Feb12 ? 00:00:59 ssh -v -f -XK -N -L 5997:localhost:5997 mu2etrk@mu2edaq09.fnal.gov | |||
[murat@murat01 ~]$ kill -9 344960 345784 | |||
</pre> | |||
* SL7: VNC server v1.8.0 crashes on SL7 : disable back store - use <b>-bs</b> option when starting the VNC server | |||
: see details at https://mu2e-hnews.fnal.gov/HyperNews/Mu2e/get/Sim/744/6/2/2/1/1.html | |||
* 8/8/19 - Using "-bs" seems to break the root geometry viewer ogl (OpenGL) option - driver upgrade in the end of Sep'2019 fixed that | |||
* copy and paste doesn't work with TigerVNC 1.8.0 / SL7 : see workaround at https://mu2e-hnews.fnal.gov/HyperNews/Mu2e/get/Sim/744/6/2/2/1/2.html | |||
* make sure you have the following in ~/.vnc/xstartup : unset DBUS_SESSION_BUS_ADDRESS | |||
===<ins>Accessing Fermi windows cluster from Linux</ins>=== | |||
rdesktop on SL6, xfreerdp on SL7 (xfreerdp comes from the RPM called 'freerdp'). Command: | |||
xfreerdp fermi-ts -u <username> -d fermi | |||
[https://fermi.servicenowservices.com/kb_view.do?sysparm_article=KB0011374 More info] | |||
[[Category:Computing]] | |||
[[Category:Infrastructure]] |
Latest revision as of 18:11, 22 October 2024
Introduction
Fermilab maintains several machines for interactive login by Mu2e members. Typically all interactive work would be done on the mu2evm (GPCF) nodes. This web page describes how to log in to these machines and and a few others. We support the bash shell exclusively.
If you cannot find the information you need on this page, please
- Remember to check the section on documentation supported by other organizations
- Look at the Mu2e Computing Help page which contains links to additional material.
Machines
The interactive login nodes come in these groups:
- mu2egpvm01 through mu2egpvm07
- This is a pool of virtual machines within the General Purpose Computing Farm (GPCF), the main interactive computing facility for use by the Intensity Frontier experiments. They are identical quad-core virtual machines running the Alma Linux 9 (AL9) operating system. Each VM shares a host server with other VMs, some of which may be assigned to other experiments.
- These machines are intended for developing, compiling and linking jobs and other general purpose uses. You can also run short to moderate jobs here - large jobs should be submitted to the grid. These nodes mount all the disks.
- You can also access these machines by login into mu2evm.fnal.gov. This is a load balancer which will forward to one of 01 through 07.
- Monitoring of infrastructure, nightly validation and submission of production jobs (using the mu2epro account) all run on mu2egpvm01.
- mu2ebuild02.fnal.gov This a 32-core (64 thread) bare metal machine running AL9. It is setup very similarly to the virtual machines. This machine is only for building code (running scons) and running a few simple tests on the build results. It explicitly is not for running production jobs, analysis, or anything at all that takes more than a few minutes. As soon as anyone uses the machine for running jobs, its purpose as a fast turn-around build machine would be defeated.
- mu2edaq01.fnal.gov This is a 24-core virtual machine, running AL9, dedicated to developing the DAQ and triggers. Special login permission required.
- mu2eimagegpmv01.fnal.gov A dedicated machine, running Docker server, for building Docker images. Ask offline management for login permissions.
- fnalu.fnal.gov This is a legacy machine which we have access to, but it is is only used for a few very specific purposes.
- FermiCloud OpenStack Service Request a custom configured VM; best suited for temporary use.
You can only log in to the above nodes if you have a Fermilab computing account and accounts on the Mu2e interactive machines. See ComputingAccounts. The only permitted access method is ssh authenticated with a kerberos ticket, as described more below.
Logging in from Linux or Mac's
If you are running a Fermilab SL distribution or are using a Fermilab maintained Mac, your /etc/krb5.conf file will be correct. In all other cases update your krb5.conf with the Fermlab recommended krb5.conf; this page requires VPN for access. Anyone can apply for #VPN access but it takes a few days so we recommend that you ask a colleague to send your their known-good /etc/krb5.conf file and install it on your machine.
From a Unix or Mac system you need to issue the following commands to log into one of the Fermilab interactive machines:
> kinit -l 6d -f [username@FNAL.GOV] > ssh -AKX -l your_kerberos_principal mu2egpvm01.fnal.gov
An alternate form of the last line is:
> ssh -AKX your_kerberos_principal@mu2egpvm01.fnal.gov
The -f argument to kinit requests a forwardable kerberos ticket; this means that when you are logged in to your target machine you can request services that ask for kerberos authentication. Otherwise you just have permission to get into the machine, not to get further authorization once there. The -AK argument to ssh requests ssh to forward your forwardable ticket. The X argument might or might not be necessary: see the next section.
If your username on your desktop/laptop is he same as your kerberos principal, you may omit the "-l your_kerberos_principal" or the "your_kerberos_principa@".
You can change the default behaviour of your ssh using the file ~/.ssh/config
. We recommend adding the following lines:
Host mu2e* GSSAPIAuthentication yes GSSAPIDelegateCredentials yes ForwardAgent yes ForwardX11Trusted yes ForwardX11 yes
On most systems this will let you drop the explicit -AKX arguments. If your username on your laptop is the same as your kerberos principal, then the command is reduced to:
> ssh mu2egpvm01.fnal.gov
To learn more about the file ~/.ssh/config
google it. I found this one useful: https://linuxize.com/post/using-the-ssh-config-file .
Mac OpenGL 3D Error
When using OPEN GL based 3D event displays on MAC OS some people will get an error message containing the string "cannot load swrast driver". When this occurs no graphics is produced. The specific circumstances in which this error has been observed are:
- You are working on a Mac laptop or desktop.
- You are logged into one of the Mu2e linux machines ( for example one of the mu2egpvm machines ).
- You are running a graphics program on the linux machine that opens a graphics window on your display.
- Your Mac is using XQuartz installed as its X11 server and the version is at least 2.7.10.
- Two cases in which this error has been seen are:
- using the Geant4 based event display ( see the g4test_01.fcl example on the G4 instructions page.
- using the ROOT based geometry browser.
The most general solution is:
- Quit XQuartz.
- Open a fresh Terminal window and issue the command defaults write org.macosforge.xquartz.X11 enable_iglx -bool true
- Restart XQuartz and open a new Terminal window (either from the Applications menu or using the cmd-N keyboard shortcut). ( It is different from the default Mac Terminal - it is really an xTerm. )
- Use this xTerm window to login to a mu2egpvmxx machine: ssh -KAX userID@mu2egpvmxx.fnal.gov where userID is of course your own user ID.
- Your 3D graphics should now work, although you may still see an initial complaint.
In the error message, "swrast" refers to software rasterization. Depending on the details of your computer, you may have a high end graphics card capable of hardware rasterization of 3D graphics. If you do not, then X11 installation needs to do software rasterization of 3D graphics (which will work but will be slower).
If you have both a low and and a high end graphics card, your Mac normally automatically switches between the two (it uses the low end card when it can in order to save energy ). However there is a bug in the automatic switching that leads to the same error as seen above. In this case a possible solution is to disable automatic switching and to always use the high end card. The instructions for this are:
- To see if you have video cards: open up the Apple Menu and chose “About This Mac”. Click on “System Report”. In the left hand sidebar click on Graphics/Displays. On my machine this shows: AMD Radeon R9 M370X Intel Iris Pro The first is the more powerful video card; the second is the default on-chip video “card”.
- If you see only one video card then these instructions are not useful; use the instructions above.
- Go to the System Preferences (Gear icon) and choose energy saver. At the top is a check box for automatic graphics switching. Uncheck the box.
- Log out of the remote linux machine; restart XQuartz; log in again into the remote linux machine and retry.
Note on Mac's
- MacOS 11, Big Sur, was released Nov 12, 2020. See #Known_Issues_with_MacOS_11.2C_Big_Sur for a description of known issues.
- To log into to the Mu2e interactive machines at Fermilab, you may need to download and install the Fermilab recommended /etc/krb5.conf (requires VPN for access) and consult the web page with suggestions on how to resolve ssh problems. Be aware there is a ticket cache and a "Ticket Viewer".
- Any time that you upgrade your OS you must check whether or not the upgrade overwrote /etc/krb5.conf; if necessary restore it from the link above.
- Starting Wed, Nov 4, 2020, any Mac computer running macOS High Sierra (v10.13) will be blocked from accessing the Fermilab network until the machine is upgraded; all earlier versions of Mac OS are already blocked.
- Mac OS X users can acquire the X.Org X Window System disk image at xquartz.org.
- For most general Mac questions the best source of information is the Fermilab mailing list, MACUSERS@listserv.fnal.gov. See [1] to subscribe. The list is archived at: [2] . The lab also has a MAC_ANNOUNCE list that is archived at [3] .
- The lab goes through a process to determine if a new OS meets the lab’s security baseline; the process typically takes a few to 6 months. During this time Fermilab owned Macs will not be upgraded to the new OS but personal or university owned Macs with the new OS are permitted at the lab. The most common issue is forgetting to configure /etc/krb5.conf ( requires VPN for access). For other issues consult the MACUSERS mailing list, described above.
- If you use Scientific Linux Fermi (SLF) it is normally configured so that when you use ssh on your laptop to log in to a remote node ( like one of the GPCF nodes), software running on that remote node is permitted to open a new window on your laptop display. If this does not work, add the -X or -Y options to your ssh command:
> ssh -X -AK -l your_kerberos_principal mu2egpvm01.fnal.gov
XQuartz Beta Release 2.8.0
If you install this release, read the instructions carefully. The install requires a reboot but many people miss that. The result is login sessions that hang.
Monterey
Update 12/2022: On MacOS Big Sur (and apparently also Monterey), if you want to use kinit on the command line, you need to explicitly configure where the ticket cache is; in .bashrc, export KRB5CCNAME=KCM:uid. See also MIT.
Big Sur
Update 9/2023, from the lab: Starting Tuesday, Oct. 31, 2023, any Mac computer running macOS Big Sur (v11) will be blocked from accessing the Fermilab network. Fermilab-owned computers, by laboratory policy, must run vendor-supported operating systems to avoid security risks.
Update 12/2022: On MacOS Big Sur, if you want to use kinit on the command line, you need to explicitly configure where the ticket cache is; in .bashrc, export KRB5CCNAME=KCM:uid. See also MIT.
Update Feb 23, 2021: I have not heard anything about this in a long time. I expect that it has been solved but I have not heard a conclusive answer.
MacOS 11, Big Sur, was released Nov 12, 2020. There is one known issue.
One user has reported that out of the box OpenGL does not work correctly. This affects some of our event displays and geometry browsers and probably some other ROOT based graphics. The ROOT team is aware of the issue and is working with a member of SCD to resolve the issue.
The lab’s Mac support team has said that this is out of the scope of their expertise but they did provide some information:
A few years ago Apple announced that macOS would move away from OpenGL in favor of the Apple created Metal. At that time it was only mentioned that it would be removed in a “future OS”. From memory OpenGL and OpenCL were deprecated with macOS Mojave v10.14. I have seen references online that macOS Catalina does sill have it, but it remains stuck at v4.1 (2010) and will throw error messages when building. Looking online, it appears that OpenGL still exists in macOS Big Sur according to this Apple Developer article https://developer.apple.com/documentation/xcode/porting_your_macos_apps_to_apple_silicon From the article: If your app uses Metal, OpenGL, or OpenCL, be aware of the following differences: • The GPU and CPU on Apple silicon share memory. • OpenGL is deprecated, but is available on Apple silicon. • OpenCL is deprecated, but is available on Apple silicon when targeting the GPU. The OpenCL CPU device is not available to arm64 apps. You may need to research a little more to see what you need to do to include OpenGL with your builds
Mojave
Mojave Security Update 2021-004 broke Kerberos for me
Mojave will be blocked from the Fermilab network starting Oct 22, 2021.
Anaconda
Installing the anaconda python analysis package can interfere with shell operation and kerberos. hypernews. Here's an overview from experience with Big Sur:
- it changed the default kinit to a conda version, which fails (gssapi-etc)
- it switches you to the zsh (your prompt will probably change)
Ask "which kinit" or echo $SHELL to see if that's the problem. /usr/bin/yourname not anything with anaconda or conda in it!
Adding "conda deactivate" as the last line of your .bashrc doesn't do the trick; you still end up in the zshell. I added conda deactivate as the last line of my .zshrc (which it created) and left it in my .bashrc and all was well. There may well be more intelligent ways to do this. You can conda activate later.
- https://uscms.org/uscms_at_work/physics/computing/getstarted/uaf.shtml#MacBigSur has useful information
In one case none of the above worked to restore ssh functionality following installation of anaconda. The solution was to use the -v (verbose) option on ssh. Why this worked is not understood but we have a guess: verbose mode enables debugging and it tries addition options if the first attempts fail. Presumably this modified some sticky state that had been polluted by the Anaconda kerberos.
Added Sept 19, 2024: I was told that adding this line to krb5.conf
default_ccache_name = API:
will allow us to access Fermilab machines using both regular and anaconda kinit. If you do try this please comment on the Mu2e slack about success or failure.
Networking connection 6/2022
I just came to Fermilab for the first time in a month or two, and my computer would not connect to the internet. It would connect to fgz, but then DNS wouldn’t work. It’s been registered for almost five years and it always works.
Like I said, this stumped the Help Desk. I started poking around, and if you open network preferences, there’s a new option (or at least I don’t recall ever seeing it) called “Limit IP Address Tracking”. I unchecked this and it immediately started working.
Catalina
Because it was declared end-of-life, Catalina (v10.15) was blocked from the Fermilab network on 10/28/22.
Ventura
4/2023 from Rob: I recently upgraded my lab Mac laptop to Ventura, upgraded XCode to version 14 and root to v6.28/00. Root worked properly for viewing histograms and browsing TTrees. However, there are two issues:
- Using the GeometryBrowser I can't get the OGL view to work, only the default wireframe view.
- When I use #include within a .C file to include code to be compiled, root cannot find the #included file; true even with ROOT_INCLUDE_PATH set what I believe is correctly.
I upgraded to root 6.28/02. Still not luck. I also tried the homebrew install and got a random old version that did not work.
I spoke with Philippe Canal earlier this afternoon who told me that the root team is aware of issues with root on Ventura and are working on them. They will be fixed in an upcoming release. Many things are fixed in the head of root if anyone wants to build it on their own. I will wait for a new release.
Update 5/8/23 from Rob: The workaround is to install an older root, v6.26.10. I useed the root distribution tar.gz file for Mac OS 13.0 and Code 14, even though I am running Mac OS 13.3.1. It's working. Today Axel Naumann announced the release of root 6.28/04 with support for gcc 13, Xcode 14 and macOS 13.3 (Ventura). I have asked Kyle to provide an art suite with this root.
Logging in From PC's
Fermilab does not officially support logging in to one of the Mu2e interactive nodes from a PC. We are trying to change this. Your options are:
- The current recommended option is to use puTTy ssh client and xming xwindows server. Unoffical but helpful links: CMS doc link link link.
- Another option is to install cyqwin , which provides a Linux-like environment for Windows. Useful instructions can be found here cygwin-instructions. You can install kerberized ssh in this environment. Consult with the Service Desk to learn how to configure ssh to work correctly.
- The service desk may recommend Reflection software. You can run terminals on a remote linux host and display the terminal and other xwindows on your PC, and use ftp to move files.
- You can install SLF as a guest virtual OS hosted by your Windows machine.
- Purchase and install WRQ, which is X-Windows software that runs on PCs; configure it to do kerberized ssh. The Service Desk may be able to help with this configuration because they support WRQ but only for Fermilab employees. You need to pay for WRQ and non-employees are not covered by the Fermilab license.
- You can configure your machine for dual boot and install both Linux and Windows. Boot to Linux when you wish to log in to Fermilab. This is very inconvenient if you need to switch from one OS to the other frequently.
Documentation Supported by other Organizations
The U.S. CMS LHC Physics Center (LPC, based at Fermilab, maintains a page on their wiki with a lot of information logging in to Fermilab machines from many types of laptops and workstations. They have the resources to keep it much more detailed and much more up to date than we do:
https://uscms.org/uscms_at_work/physics/computing/getstarted/uaf.shtml
Remote Work
We recommend you install and use, or at least be prepared to use, the lab VPN. For working on the Muse central interactive linux machines (code development and job submission), we recommend using a remote desktop, a VNC.
Known restrictions
When working from offsite, the restrictions are a bit higher.
- Some lab web sites, such as Jenkins and employee services, require you to access the site only through the lab Virtual Private Network (VPN).
- for direct ssh (no VPN) from a remote linux machine to a Muse2 central interactive server, we have observed a limit of no more than 20 ssh connections in a minute.
VPN
Some web pages at the lab are restricted to viewing only on the lab network. If you are offsite and want to access one of these pages, you can use a VPN, which runs on a gateway node, authenticates you, then redirects your web traffic onto the lab network. Here is the lab VPN (use your services [email] password) and some VPN help. As of 8/2019, the VPN requires multi-factor authentication. There are two forms, a software or RSA form which is good enough for most users, and a yubikey (usb dongle) stronger form for people who need to access personnel and business information.
Most Mu2e people have an RSA App on their phone to generate the "soft token" needed to access Fermilab VPN. If you change to a new phone, you may need to contact the service desk to request a new "verification code" for the app.
If you try click on a link to a service that requires you be on site or on VPN, but your are not, then you will see one of two outcomes. Sometimes you get an error message saying that you must be on site or on VPN. An increasing fraction of the time nothing happens - no error message and your browser does not move from the page it was on. If the latter happens to you, ask a colleague if the page requires on site or VPN.
VNC
General information
VNC stands for Virtual Network Connection. It allows you to run your session on one of Mu2e interactive machines and display the running session it on your local desktop of laptop. VNC runs in a client-server mode, with client performing only display functions. Therefore, if you disconnect and reconnect later, you will continue to work in the same session. VNC handles efficiently the X11-compression and works over the network much faster than a direct SSH connection. It works well on network connections with ping times up to 200 ms, getting in trouble only if TCP packets start getting lost.
VNC server software is installed on MU2EGPVM* machines. VNC server runs in a user mode - each user starts his own server(s). The local computer only needs a VNC client and a kerberized SSH installations.
Below are a few links to general VNC tutorials:
Setting up a VNC server
To set up a VNC server follow these instructions:
- ssh into one of the mu2egpvm machines (like mu2egpvm04)
- once logged in, do:
- check already running VNC servers:
murat@mu2egpvm02:~>uname -a; ps -efl | grep -i Xvnc | cut -c-120 Linux mu2egpvm02.fnal.gov 3.10.0-1127.13.1.el7.x86_64 #1 SMP Tue Jun 23 10:32:27 CDT 2020 x86_64 x86_64 x86_64 GNU/Linux 0 S bvitali 3704 1 0 80 0 - 286048 ep_pol Jul18 ? 02:37:19 /usr/bin/Xvnc :6 -auth /nashome/b/bvitali/.Xa 0 S murat 3797 3326 0 80 0 - 28204 pipe_w 17:11 pts/57 00:00:00 grep --color=auto -i Xvnc 0 S mmackenz 3888 1 0 80 0 - 125007 ep_pol Jul31 ? 03:32:25 /usr/bin/Xvnc :23 -auth /nashome/m/mmackenz/. 0 S defelice 4232 1 0 80 0 - 205764 ep_pol Jul17 ? 03:49:00 /usr/bin/Xvnc :08 -auth /nashome/d/defelice/. 0 S zanetti 11491 1 0 80 0 - 65755 ep_pol Sep08 ? 00:00:13 /usr/bin/Xvnc :2 -auth /nashome/z/zanetti/.Xa 0 S mmackenz 14149 1 0 80 0 - 63366 ep_pol Jul17 ? 00:03:11 /usr/bin/Xvnc :1 -auth /nashome/m/mmackenz/.X 0 S bbarton 18286 1 0 80 0 - 77543 ep_pol Jul17 ? 02:33:33 /usr/bin/Xvnc :5 -auth /nashome/b/bbarton/.Xa 0 S chenj 21733 1 0 80 0 - 129571 ep_pol Jul28 ? 06:07:57 /usr/bin/Xvnc :9 -auth /nashome/c/chenj/.Xaut 0 S gianipez 30193 1 0 80 0 - 83661 ep_pol Aug19 ? 00:09:30 /usr/bin/Xvnc :4 -auth /nashome/g/gianipez/.X 0 S huangs 32386 1 0 80 0 - 92075 ep_pol Aug04 ? 03:27:20 /usr/bin/Xvnc :29 -auth /nashome/h/huangs/.Xa
In this printout the Xserver ID is the field that immediately follows Xvnc; for example in the last line it is 29.
- start your VNC server with unused Xserver ID, for example, use ID=7:
- (make sure you start the VNC server before running any Mu2e-specific setups, having those in ~/.bashrc, for example, might result in a problem!)
kinit [username@FNAL.GOV] # get Kerberos ticket vncpasswd # create your VNC server password
vncserver :7 -name MY_VNC -depth 24 -geometry 1920x1080 -localhost -bs
Replace MY_VNC with your kerberos principal. Using '-localhost' option is a must, the server should be listening to a local port
Setting up a VNC client on Linux
- return to your local machine
- download a vncviewer. There is a multitude of those, for example, TigerVNC, RealVNC,etc. Mac OS has a native vncviewer, but it is slower than the others. TigerVNC is the most performant one, we recommend trying it first.
- once you have a VNC viewer installed, on the local machine, start a SSH tunnel connecting the local machine to the remote server: ssh -v -f -KX -N -L PORT:localhost:PORT <kerberos_username>@mu2egpvm04.fnal.gov
- replace PORT with 5900+ID , replace mu2egpvm04 with the name of the machine where you started the vncserver.
- open the vncviewer and type: localhost:ID, where ID is the same as above, then click "connect"
- you will be asked to enter the password you set on step (3) .
- On Macs, see below: this should be 5900+ID!!
notes:
This is it! you now have acccess to your server that will look like a linux machine.
- to use KDE as a window manager (KDE is better than GNOME, but often GNOME comes as the default) configure ~/.Xclients and ~/.vnc/xstartup files on the server side
# ---------------------------- ~/.Xclients the mode: -rwx--x--x #!/bin/bash startkde & # --------------------------------- ~~/.vnc/xstartup : -rwx--x--x #!/bin/sh [ -r /etc/sysconfig/i18n ] && . /etc/sysconfig/i18n export LANG export SYSFONT vncconfig -iconic & unset SESSION_MANAGER unset DBUS_SESSION_BUS_ADDRESS OS=`uname -s` WINDOWMANAGER=kde if [ $OS = 'Linux' ]; then case "$WINDOWMANAGER" in *gnome*) if [ -e /etc/SuSE-release ]; then PATH=$PATH:/opt/gnome/bin export PATH fi ;; esac fi export DESKTOP=KDE if [ -x /etc/X11/xinit/xinitrc ]; then exec /etc/X11/xinit/xinitrc fi if [ -f /etc/X11/xinit/xinitrc ]; then exec sh /etc/X11/xinit/xinitrc fi [ -r $HOME/.Xresources ] && xrdb $HOME/.Xresources xsetroot -solid grey # xterm -geometry 80x24+10+10 -ls -title "$VNCDESKTOP Desktop" & kdeinit4 &
Setting up a VNC client on Windows
- install Cygwin in a minimal configuration, you only need the core, krb5 client and openssh
- copy /etc/krb5.conf from one of the Mu2e interactive nodes to /etc directory of Cygwin installation (requires admin privilege)
wget http://metrics.fnal.gov/authentication/krb5conf/Linux/krb5.conf
- create the following .ssh/config file in the home directory
Host * GSSAPIAuthentication yes GSSAPIDelegateCredentials no ForwardX11Trusted yes
- start Cygwin
- the rest is the same, as for Linux
Setting up a VNC client on MacOS
- mostly, the same as on Linux
- to setup an ssh tunnel, run
ssh -v -f -KXY -N -L PORT:localhost:PORT <kerberos_username>@mu2egpvm04.fnal.gov
- now start your client (Chicken etc); use your password; localhost:5900+ID
- when connecting a client, use 5900+ID instead of ID, i.e. localhost:5901 instead of localhost:1
Few useful scripts on mu2egpvm* nodes
- check VNC servers running on a given machine, in this example - mu2egpvm01. Look at several (mu2egpvm01-mu2egpvm06), choose the one which is less loaded
kinit ssh YOUR_FNAL_USERNAME@mu2egpvm01.fnal.gov /mu2e/app/users/murat/bin/check_running_vnc_servers /usr/bin/Xvnc :2 huangs /usr/bin/Xvnc :22 mchattor /usr/bin/Xvnc :3 kharrig /usr/bin/Xvnc :99 murat /usr/bin/Xvnc :1 merrill
- choose the display number which is not used, for this example display=23 would do. Start VNC server and create password:
ssh YOUR_FNAL_USERNAME@mu2egpvm01.fnal.gov /mu2e/app/users/murat/bin/start_vnc_server :23 1920x1080 # 1920x1080 - is the screen size displayed by the server vncpasswd
- kill server running on display :23 :
ssh YOUR_FNAL_USERNAME@mu2egpvm01.fnal.gov /mu2e/app/users/murat/bin/kill_vnc_server :23
Comments
- you must limit the terminal history scrolling to not more than 10000 lines. Otherwise, the /tmp area on the central machine
- will get filled up and the machine will need to be rebooted.
- Once in a while, you need to reconnect. When restarting the SSH tunnel on the local machine, don't forget to kill the stale SSH tunnel processes.
- Issue the following command to find those:
ps -efl | grep ssh
- you can add the following function to your .bashrc and use it to restart the SSH tunnel - it automatically finds and kills stale tunnel processes.
- it is assumed that the used port numbers on local and remote machines are the same and that the server is running within the fnal.gov domain
#--------------------------------------------------------------------------------------- # to restart SSH port tunneling for VNC server running on mu2egpvm04 and using port 5902: # # vnc 2 mu2egpvm04 #---------------------------------------------------------------------------------------- function vnc () { display=$1 host=$2 # assume "$host.fnal.gov" exists port=`printf "59%02i" $display` # don't forget to check if the port is available forwarding=$port:localhost:$port kill -9 `ps -efl | grep ssh | grep $forwarding | awk '{print $4}'` ; ssh -v -f -X -N -L $forwarding $host.fnal.gov ; }
Known problems
- AL9: ignore the following diagnostics
WARNING: vncserver has been replaced by a systemd unit and is now considered deprecated and removed in upstream. Please read /usr/share/doc/tigervnc/HOWTO.md for more information.
- when you restart the SSH tunnel on a client side, check currently running SSH tunnels, kill the stale ones:
[murat@murat01 ~]$ ps -efl | grep ssh | grep "\-L" 1 S murat 344960 1 0 80 0 - 57739 - Feb12 ? 00:00:28 ssh -v -f -XK -N -L 5999:localhost:5999 mu2egpvm06.fnal.gov 1 S murat 345784 1 0 80 0 - 57745 - Feb12 ? 00:00:59 ssh -v -f -XK -N -L 5997:localhost:5997 mu2etrk@mu2edaq09.fnal.gov [murat@murat01 ~]$ kill -9 344960 345784
- SL7: VNC server v1.8.0 crashes on SL7 : disable back store - use -bs option when starting the VNC server
- 8/8/19 - Using "-bs" seems to break the root geometry viewer ogl (OpenGL) option - driver upgrade in the end of Sep'2019 fixed that
- copy and paste doesn't work with TigerVNC 1.8.0 / SL7 : see workaround at https://mu2e-hnews.fnal.gov/HyperNews/Mu2e/get/Sim/744/6/2/2/1/2.html
- make sure you have the following in ~/.vnc/xstartup : unset DBUS_SESSION_BUS_ADDRESS
Accessing Fermi windows cluster from Linux
rdesktop on SL6, xfreerdp on SL7 (xfreerdp comes from the RPM called 'freerdp'). Command:
xfreerdp fermi-ts -u <username> -d fermi