Difference between revisions of "Code"

Latest revision as of 16:15, 23 August 2024

Building code

End of Life for Scientific Linux 7 Instructions needed for June 2024 only.
UPS to Spack Transition ongoing from spring 2024
CodeEnvironment how to setup the linux environment
GitIntro code management preliminaries for newcomers
OfflineStatus which branch or tag of Mu2e Offline you should start from
GitHubWorkflow - code repository checkout and commit procedures
IncludeFiles - where to find include files
Muse - Mu2e code setup and build scripts
scons - internal commercial build tool, called by Muse
Building Offline with cmake - DAQ is building Offline using a different commercial tool.
Debugging code debugging tools and tips
Mu2e github organization
UPS - using the Fermilab UPS product setup
Redmine - a few pieces of code are still in the redmine git repository
CVS - a few pieces of code are still in the CVS repository

Configuring executables

fcl - intro to fcl art job control language
- paths - which modules and what order
- I/O modules
- Message logger
Search paths - how data, fcl, and other control files are found
SimpleConfig - another way to input parameters to an executable
Simulation - an overview
- SimulationFCL - fcl procedures for MDC2020 and later
- Generators - generating the first particle
  - CORSIKA cosmic ray simulation
- Staging - how and why of running the simulation in stages
- Time simulation - adding lifetimes
- Bunch intensity - simulating bunch-to-bunch variations
- Mixing - mixing background and signal simulation
- RunNumbers - how run numbers ranges are used
Other applications
- EventDisplays
- Ntuples - data access at the interactive level
- Machine learning - neural networks

Modules, Products, and Services

Modules
Products
Geometry
- Units and Coordinate Systems
Alignment
Random numbers:
- Basic Instructions
- Complete Instructions
Magnetic Field Maps
Conditions Data
- CalibrationSets
Services
- Framework services
SimpleConfig
Exceptions
Message logger
PyWrap - wrap compiled c++ code so it can be used in python
art error codes
Elastic Analysis Facility (EAF)

Code Management

Spack - setup and build tool to replace UPS and MRB
SpackMaintenance - expert procedures and debugging
Legacy_Access_to_SL7
MuseMaintenance - Muse procedures for experts
ReleaseList
git - overview and pointers to detailed and mu2e-specific instructions
Validation - automatic and occasional procedures for validation
GeantChecklist - validation of new geant versions
Jenkins - a central build platform
CVMFS - a virtual disk mount containing our code
Docker a portable software container to hold and run our environment and software
Download - pull a local copy to remote institutions or laptops
scisoft - server for product manifests
BTrk - (deprecated) the Kalman fitter code is in this non-standard product
KinKal - a repo and UPS product containing the core track Kalman fit code
CVS
CodeDepencyGraph - how to make the code dependency graph
DAQ DAQ redmine
building root
checkPrerequisites tool - check linux has rpms needed by art
SconsUPS - how to build a new version of scons, packaged for UPS
Pyana - setting up python analysis packages
Github CI Maintenance - information about the CI repo, used by Jenkins for build tests

Standards and Practices

CodingStandards - an overview of code issues
CodeTools - code formatting and checking tools
Magic numbers - where to get value of pi, etc.
Editors - tips on editors and policy of not using tab characters.
Debugging
GeantTips
ISO 8601 time format
CMS code references:
FAQs

External Packages

UPS manual getting started
Mu2e github redmine lab LXR Mu2e LXR LXR project
art doc github redmine browser art-users product flags error codes
gcc features development gcc library dependence
recent art stakeholders meetings; older art stakeholders meetings
artdaq wiki
Paterno memory profiling instructions
valgrind]
MAP and DDT debuggers
CMS Framework LXR
CMS github PR more info
root docs
geant at Fermilab DOxygen(v9.4.p01) LXR
Geant4Examples How to run the standard Geant4 examples on the Mu2e interactive machines.
G4Beamline Mu2e manual
CLHEP CLHEP(v.2.2.0.4)
HepPDT
fhicl fhicl-cpp
cetlib browser cetmodules
Message Facility browser
cpp0x browser
boost browser
BTrk browser
LXR browsers for many Fermilab projects
scons
MARS (password protected)

@@ Line 1: / Line 1: @@
 == Building code ==
-::* Basic recipe for creating a satellite release
-<pre>
-source /cvmfs/fermilab.opensciencegrid.org/products/common/etc/setups
-setup mu2e
-/cvmfs/mu2e.opensciencegrid.org/Offline/v6_0_0/SLF6/prof/Offline/bin/createSatelliteRelease
-cd Satellite
-source setup.sh
-[add content]
-scons -j 4
-</pre>
-* Basic recipe for setup, full checkout and build
-<pre>
-source /cvmfs/fermilab.opensciencegrid.org/products/common/etc/setups
-setup mu2e
-- either -
+* [[End of Life for Scientific Linux 7]] Instructions needed for June 2024 only.
-git clone http://cdcvs.fnal.gov/projects/mu2eofflinesoftwaremu2eoffline/Offline.git
+* [[UPS to Spack Transition]] ongoing from spring 2024
-- or -
+* [[CodeEnvironment]] how to setup the linux environment
-git clone ssh://p-mu2eofflinesoftwaremu2eoffline@cdcvs.fnal.gov/cvs/projects/mu2eofflinesoftwaremu2eoffline/Offline.git
+* [[GitIntro]] code management preliminaries for newcomers
+* [[OfflineStatus]] which branch or tag of Mu2e Offline you should start from
-cd Offline
+* [[GitHubWorkflow]] - code repository checkout and commit procedures
-git checkout -b work
+* [[IncludeFiles]] - where to find include files
-source setup.sh
+* [[Muse]] - Mu2e code setup and build scripts
-scons -j 4
+* [[scons]] - internal commercial build tool, called by Muse
-</pre>
+* [[Building Offline with cmake]] - DAQ is building Offline using a different commercial tool.
-* for building options (debug,trigger,visualization) see <code>./buildopts --help</code>
+* [[CodeDebugging|Debugging]] code debugging tools and tips
-<br>
+* [https://www.github.com/Mu2e Mu2e github organization]
-* [[ReleaseList]] - notes on purpose for each published release
+* [[UPS|UPS]] - using the Fermilab UPS product setup
-* [[UPS|UPS]] - notes on using the UPS product setup
+* [[Redmine]] - a few pieces of code are still in the redmine git repository
-* [[Git|git]] - code repository management
-* [[scons]] - primary code build tool
-* [[SatelliteRelease|Satellite Releases]] - for building only the part of the code base you need
-* [[CodeDebugging|Debugging]]
 * [[CVS]] - a few pieces of code are still in the CVS repository
@@ Line 47: / Line 25: @@
 * [[SimpleConfig|SimpleConfig]] - another way to input parameters to an executable
 * [[Simulation|Simulation]] - an overview
+** [[SimulationFCL]] - fcl procedures for MDC2020 and later
 ** [[Generators]] - generating the first particle
+*** [[CORSIKA]] cosmic ray simulation
 ** [[Staging|Staging]] - how and why of running the simulation in stages
 ** [[TimeSim|Time simulation]] - adding lifetimes
 ** [[BunchIntensity|Bunch intensity]] - simulating bunch-to-bunch variations
 ** [[Mixing|Mixing]] - mixing background and signal simulation
+** [[RunNumbers]] - how run numbers ranges are used
 * Other applications
 ** [[EventDisplays]]
-** [https://sites.google.com/view/stntuple/home Stntuple] [ssh://p-mu2eofflinesoftwarestntuple@cdcvs.fnal.gov/cvs/projects/mu2eofflinesoftwarestntuple/Stntuple.git git url] - one choice of user ntuple
+** [[Ntuples]] - data access at the interactive level
+** [[MachineLearning|Machine learning]] - neural networks
 == Modules, Products, and Services ==
@@ Line 61: / Line 43: @@
 ** [[FclIOModules|I/O modules]]
 ** [[FilterModules|Filter Modules]]
-** [https://cdcvs.fnal.gov/redmine/projects/art/wiki/Configuration_validation_and_description fcl validation]
 * Products
 ** [[ReadProducts|Reading products]]
@@ Line 72: / Line 53: @@
 ** [[SchemaEvolution| Schema Evolution]]
 * [[Geometry|Geometry]]
-** [http://mu2e-docdb.fnal.gov:8080/cgi-bin/ShowDocument?docid=1120 Units and Coordinate Systems]
+** [http://mu2e-docdb.fnal.gov/cgi-bin/ShowDocument?docid=1120 Units and Coordinate Systems]
+* [[Alignment]]
 * Random numbers:
 ** [[RandomNumbersBasic|Basic Instructions]]
@@ Line 78: / Line 60: @@
 * [[MagneticFieldMaps|Magnetic Field Maps]]
 * [[ConditionsData|Conditions Data]]
+** [https://mu2einternalwiki.fnal.gov/wiki/CalibrationSets CalibrationSets]
 * [[Services|Services]]
 ** [[ArtServices|Framework services]]
@@ Line 83: / Line 66: @@
 * [[Exceptions|Exceptions]]
 * [[MessageLogger|Message logger]]
+* [[PyWrap]] - wrap compiled c++ code so it can be used in python
 * [https://cdcvs.fnal.gov/redmine/projects/art/wiki/ArtExitCodes art error codes]
+* [[Elastic Analysis Facility (EAF)|Elastic Analysis Facility (EAF)]]
 == Code Management ==
+* [[Spack]] - setup and build tool to replace UPS and MRB
+* [[SpackMaintenance]] - expert procedures and debugging
+* [[Legacy_Access_to_SL7]]
+* [[MuseMaintenance]] - Muse procedures for experts
 * [[ReleaseList]]
 * [[Git|git]] - overview and pointers to detailed and mu2e-specific instructions
 * [[Validation]] - automatic and occasional procedures for validation
+* [[GeantChecklist]] - validation of new geant versions
 * [[Jenkins]] - a central build platform
-** [http://mu2e.fnal.gov/atwork/computing/ops/nightlyBuild/nightly.shtml  Jenkins Nightly build results]
+* [[Cvmfs|CVMFS]] - a virtual disk mount containing our code
-* [[Cvmfs|CVMFS]]
+* [[Docker]] a portable software container to hold and run our environment and software
 * [[CodeDistribution|Download]] - pull a local copy to remote institutions or laptops
 * [[Scisoft|scisoft]] - server for product manifests
-* [[BTrk]] - the KalMan fitter code is in this non-standard product
+* [[BTrk]] - (deprecated) the Kalman fitter code is in this non-standard product
+* [[KinKal]] - a repo and UPS product containing the core track Kalman fit code
 * [[CVS]]
+* [[CodeDepencyGraph]] - how to make the code dependency graph
 * [[DAQ]] [https://cdcvs.fnal.gov/redmine/projects/mu2edaq/wiki DAQ redmine]
+* [[RootBuild|building root]]
+* [https://cdcvs.fnal.gov/redmine/projects/artutilscripts/repository/revisions/master/raw/tools/checkPrerequisites checkPrerequisites tool] - check linux has rpms needed by art
+* [[SconsUPS]] - how to build a new version of scons, packaged for UPS
+* [[Pyana]] - setting up python analysis packages
+* [[Github_CI_Maintenance|Github CI Maintenance]] - information about the CI repo, used by Jenkins for build tests
 == Standards and Practices ==
 * [[CodingStandards]] - an overview of code issues
+* [[CodeTools]] - code formatting and checking tools
 * [[MagicNumbers|Magic numbers]] - where to get value of pi, etc.
 *  [[Editors|Editors]] - tips on editors and policy of not using tab characters.
 * [[CodeDebugging|Debugging]]
 * [[GeantTips]]
+* [https://en.wikipedia.org/wiki/ISO_8601 ISO 8601 time format]
 * CMS code references:
 ** [https://twiki.cern.ch/twiki/bin/view/CMSPublic/WebHome Home]
@@ Line 113: / Line 112: @@
 ** [[LinuxFAQ|linux]]
 ** [[RootFAQ|root]]
+** [http://thbecker.net/articles/rvalue_references/section_01.html move semantics and r-value references]
 == External Packages ==
-* [[UPS| UPS]] [http://www.fnal.gov/docs/products/ups/ReferenceManual/ manual]
+* [[UPS| UPS]] [https://cdcvs.fnal.gov/redmine/projects/ups/wiki/ReferenceManual/ manual] [https://cdcvs.fnal.gov/redmine/projects/ups/wiki/Getting_Started_Using_UPS getting started]
-* [https://cdcvs.fnal.gov/redmine/projects/mu2eofflinesoftwaremu2eoffline/repository Mu2e code] [http://cdcvs.fnal.gov/lxr/mu2eofflinesoftware/index.html LXR]
+* Mu2e [https://github.com/Mu2e github] [https://cdcvs.fnal.gov/redmine/projects/mu2eofflinesoftwaremu2eoffline/repository redmine] [http://cdcvs.fnal.gov/lxr lab LXR] [http://cdcvs.fnal.gov/lxr/mu2eofflinesoftware/index.html Mu2e LXR] [https://lxr.sourceforge.io/en/index.php LXR project]
-* [https://web.fnal.gov/project/ArtDoc/Pages/home.aspx art]  [https://web.fnal.gov/project/ArtDoc/SitePages/documentation.aspx doc] [https://cdcvs.fnal.gov/redmine/projects/art redmine] [https://cdcvs.fnal.gov/redmine/projects/art/repository/revisions/master/show/art browser] [https://listserv.fnal.gov/scripts/wa.exe?A0=ART-USERS art-users] [https://cdcvs.fnal.gov/redmine/projects/cet-is-public/wiki/AboutQualifiers product flags] [https://cdcvs.fnal.gov/redmine/projects/art/wiki/ArtExitCodes error codes]
+* [https://web.fnal.gov/project/ArtDoc/Pages/home.aspx art]  [https://web.fnal.gov/project/ArtDoc/SitePages/documentation.aspx doc] [https://github.com/art-framework-suite github] [https://cdcvs.fnal.gov/redmine/projects/art redmine] [https://cdcvs.fnal.gov/redmine/projects/art/repository/revisions/master/show/art browser] [https://listserv.fnal.gov/scripts/wa.exe?A0=ART-USERS art-users] [https://cdcvs.fnal.gov/redmine/projects/cet-is-public/wiki/AboutQualifiers product flags] [https://cdcvs.fnal.gov/redmine/projects/art/wiki/ArtExitCodes error codes]
+* [https://gcc.gnu.org/projects/cxx-status.html gcc features development] [https://gcc.gnu.org/onlinedocs/libstdc++/manual/status.html#manual.intro.status.iso gcc library dependence]
+* [https://indico.fnal.gov/category/1191/ recent art stakeholders meetings]; [https://cdcvs.fnal.gov/redmine/projects/art/wiki/Stakeholder_meeting_presentations older art stakeholders meetings]
+* [https://cdcvs.fnal.gov/redmine/projects/artdaq/wiki artdaq wiki]
 * [http://rpubs.com/paterno/303233 Paterno memory profiling instructions]
+* [http://valgrind.org valgrind]]
 * [https://cdcvs.fnal.gov/redmine/projects/art/wiki/Getting_started_with_MAP_and_DDT MAP and DDT debuggers]
 * [https://twiki.cern.ch/twiki/bin/view/CMSPublic/SWGuide CMS Framework] [http://cmslxr.fnal.gov/lxr/ LXR]
+* [https://cdcvs.fnal.gov/redmine/projects/larsoft/wiki/SetupCMSbotScriptsYourOrg CMS github PR] [https://cdcvs.fnal.gov/redmine/projects/larsoft/wiki/Maintaining_CMSbot_scripts_and_Jenkins_jobs more info]
 * [https://root.cern.ch/root/ root] [https://root.cern.ch/guides/reference-guide docs]
 * [http://geant4.web.cern.ch/geant4/  geant] [https://web.fnal.gov/project/Geant4/SitePages/Home.aspx at Fermilab]  [http://www-geant4.kek.jp/Reference/9.4.p01/Geant4 DOxygen(v9.4.p01)] [http://www-geant4.kek.jp/LXR/ LXR]
-* [http://public.muonsinc.com/Projects/G4beamline.aspx G4Beamline]  [http://mu2e-docdb.fnal.gov:8080/cgi-bin/ShowDocument?docid=1490 Mu2e manual]
+* [[Geant4Examples]] How to run the standard Geant4 examples on the Mu2e interactive machines.
+* [http://public.muonsinc.com/Projects/G4beamline.aspx G4Beamline]  [http://mu2e-docdb.fnal.gov/cgi-bin/ShowDocument?docid=1490 Mu2e manual]
 * [http://proj-clhep.web.cern.ch/proj-clhep/ CLHEP] [http://proj-clhep.web.cern.ch/proj-clhep/doc/CLHEP_2_2_0_4/html/ CLHEP(v.2.2.0.4)]
 * [http://lcgapp.cern.ch/project/simu/HepPDT/ HepPDT]
-* [https://cdcvs.fnal.gov/redmine/projects/fhicl-cpp/repository  fhicl-cpp]
+* [https://cdcvs.fnal.gov/redmine/projects/fhicl/wiki fhicl] [https://cdcvs.fnal.gov/redmine/projects/fhicl-cpp/repository  fhicl-cpp]
-* [https://cdcvs.fnal.gov/redmine/projects/cetlib cetlib] [https://cdcvs.fnal.gov/redmine/projects/cetlib/repository  browser]
+* [https://cdcvs.fnal.gov/redmine/projects/cetlib cetlib] [https://cdcvs.fnal.gov/redmine/projects/cetlib/repository  browser] [https://fnalssi.github.io/cetmodules/ cetmodules]
 * [https://cdcvs.fnal.gov/redmine/projects/messagefacility Message Facility] [https://cdcvs.fnal.gov/redmine/projects/messagefacility/repository browser]
 * [https://cdcvs.fnal.gov/redmine/projects/cpp0x cpp0x] [https://cdcvs.fnal.gov/redmine/projects/cpp0x/repository browser]

Difference between revisions of "Code"

Latest revision as of 16:15, 23 August 2024

Contents

Building code

Configuring executables

Modules, Products, and Services

Code Management

Standards and Practices

External Packages

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